| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113477581
Identifier: 113477581
GI number: 113477581
Start: 6423763
End: 6424380
Strand: Reverse
Name: 113477581
Synonym: Tery_4163
Alternate gene names: NA
Gene position: 6424380-6423763 (Counterclockwise)
Preceding gene: 113477582
Following gene: 113477580
Centisome position: 82.89
GC content: 40.45
Gene sequence:
>618_bases ATGAAATCAATACTAGTATGGGTAATTTCAGTACTACTAGTATTAACTTGCTTAGGCACGAATCCAACTATAGTCGCTGC CCAAGAACAGATATTCCTAATTGCAAATGATATTGAAGACGATGGTGATTGGGTTGTAAATTCAGAGAATCACTTCTTTC CTGATGGTGCAGAGGGCTGCAAAGCCACTGCTGGCTCAACAACACTGGGAATGGCTAATAGTTTTCCAGATTACGGAGGA AAAGCCTTTATTAATTTCGATTTTCCTTTAGTTCCTGGGGAATATGCTGTAACTATTGATGTCTGCAACTTCGATGGACC CAAGAACGACGACGGTGTATCAGCAGATCTTGCTCATGCTGATTACATTGGCCTGACTGTGGGAGGGAATAAAGATAATC CTGGCACATTGCTTACTACTGCTATTGAAACATCTAGTTCAAAGCCTCGCGTTGCATGGGGAGAAACAAAGCAATGGTCG TTTAAGTATACTTTTGCTGACAATGATCCAAACTTGGAGTCTAAGATTGGCTTTTTAATAGATGCGCCTGTGAAAGGTGA GTTCTTAAATATGAGTTTTGATAACCTCAAGATTATGATAGATCCTGCCGAAAGCTAA
Upstream 100 bases:
>100_bases TCATCTCCAGACCGAGCTAAAAACTGCGTTGTTCAATTTTTCATAGAGAAAAAAAACTACATAAGTATTTATTTAAACTA CAAAAACTGGAGGTCCTAAT
Downstream 100 bases:
>100_bases AAGTGTCGGTTGTTCATGGTAGTGGTGGTCTATCGTAATGATTTTGGTCAATACGAAGGGCAGTTGGAGTATCTTGCTCC CTTGCTAGGCATTGTTCTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MKSILVWVISVLLVLTCLGTNPTIVAAQEQIFLIANDIEDDGDWVVNSENHFFPDGAEGCKATAGSTTLGMANSFPDYGG KAFINFDFPLVPGEYAVTIDVCNFDGPKNDDGVSADLAHADYIGLTVGGNKDNPGTLLTTAIETSSSKPRVAWGETKQWS FKYTFADNDPNLESKIGFLIDAPVKGEFLNMSFDNLKIMIDPAES
Sequences:
>Translated_205_residues MKSILVWVISVLLVLTCLGTNPTIVAAQEQIFLIANDIEDDGDWVVNSENHFFPDGAEGCKATAGSTTLGMANSFPDYGG KAFINFDFPLVPGEYAVTIDVCNFDGPKNDDGVSADLAHADYIGLTVGGNKDNPGTLLTTAIETSSSKPRVAWGETKQWS FKYTFADNDPNLESKIGFLIDAPVKGEFLNMSFDNLKIMIDPAES >Mature_205_residues MKSILVWVISVLLVLTCLGTNPTIVAAQEQIFLIANDIEDDGDWVVNSENHFFPDGAEGCKATAGSTTLGMANSFPDYGG KAFINFDFPLVPGEYAVTIDVCNFDGPKNDDGVSADLAHADYIGLTVGGNKDNPGTLLTTAIETSSSKPRVAWGETKQWS FKYTFADNDPNLESKIGFLIDAPVKGEFLNMSFDNLKIMIDPAES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22097; Mature: 22097
Theoretical pI: Translated: 3.96; Mature: 3.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSILVWVISVLLVLTCLGTNPTIVAAQEQIFLIANDIEDDGDWVVNSENHFFPDGAEGC CCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCCCCEEECCCCCCCCCCCCCC KATAGSTTLGMANSFPDYGGKAFINFDFPLVPGEYAVTIDVCNFDGPKNDDGVSADLAHA CCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCC DYIGLTVGGNKDNPGTLLTTAIETSSSKPRVAWGETKQWSFKYTFADNDPNLESKIGFLI EEEEEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEEEEECCCCCCCCCEEEEE DAPVKGEFLNMSFDNLKIMIDPAES ECCCCCEEEEEECCCEEEEEECCCC >Mature Secondary Structure MKSILVWVISVLLVLTCLGTNPTIVAAQEQIFLIANDIEDDGDWVVNSENHFFPDGAEGC CCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCCCCCEEECCCCCCCCCCCCCC KATAGSTTLGMANSFPDYGGKAFINFDFPLVPGEYAVTIDVCNFDGPKNDDGVSADLAHA CCCCCCCEECCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCC DYIGLTVGGNKDNPGTLLTTAIETSSSKPRVAWGETKQWSFKYTFADNDPNLESKIGFLI EEEEEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEEEEECCCCCCCCCEEEEE DAPVKGEFLNMSFDNLKIMIDPAES ECCCCCEEEEEECCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA