| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477512
Identifier: 113477512
GI number: 113477512
Start: 6311621
End: 6312472
Strand: Reverse
Name: 113477512
Synonym: Tery_4092
Alternate gene names: NA
Gene position: 6312472-6311621 (Counterclockwise)
Preceding gene: 113477513
Following gene: 113477508
Centisome position: 81.45
GC content: 35.09
Gene sequence:
>852_bases ATGGATATTAGCAAGAAAGCTAACTGGTCAGAAGTTTACGTTCAGCCAACCCCAGCATCATATTTACAGATAGTATCTCA ACAAGAATATAGAGTACCTGATTATGGTATCCGATATCTTCGCCCACTGTTGAAAATGTTATATGAAAAAGAACAACGCC CTATAAACATTGTTGATATTGGTGCATCTTATGGTATAATTTCTACACTTTTGCTCCATGATTTAACGATGGCTCAACTC ATTGATTTTTTCATCGAGAGAGATGGCGCTCAAGAACCAACATGGGCAGAAATAGAAAGATTCTATAAGCATCAAGACAT CCGTCATACAGAATATAAATTTTATCTATCAGATAATTCTAAACCTGCCATGGATTTTGCCGAACGAGTTCAGGTTTGTG AAAAAGCCTATTGTTTTGATATGAGACATGAGCCATTACCGGAGGAGTTGAAACACATTGTTGAAACAACCGATCTCTTT ATTGCGACAGGTTCTCTTGGATACATTGGTGAATATTTCTTTCAGCAAATATTTCCTATCATCTCTCATAAATCTTTATC ACCGTTATTTGCTTTTGTTATCTATCGAGCATTTTATTCTTCTGAAATTAACAAAGTGTTTCAGGATTATGATTATACTC TGCTCAAAAGCAGTGTTCCGTTTAAGAAAGGTCGGAAGTTTGCTAGTGTCTTGGAGCAACAAAACACTATTGAATCTTTA CATCAAAAGAATATTAATACAGTTGGTCTTGAGGATGAAGGGTTTTATGCCTGTGAATTTTATTTTGGTGTACCTGTGTT GGAAAAAGAAAGGCTATATAGTTGGTTAAGACAAGAGGATCTAAAATATTAG
Upstream 100 bases:
>100_bases GTCACAACCAAAACCTTATAGGGACGTTCCATGCAAGCTCCCTACTGTAGTTTACTAAAATGAAAACTGCTGTATTTGAT ATATACAAAGGAAAATCATC
Downstream 100 bases:
>100_bases GGCAAGAGTTATTCTTTCTTGAGGCCTTAAAGGATATCATCACAAAAAAGTAAGTTGCCTAAACTCTATACTCCCAACAT TGCACTTGCCCAACCAAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 283; Mature: 283
Protein sequence:
>283_residues MDISKKANWSEVYVQPTPASYLQIVSQQEYRVPDYGIRYLRPLLKMLYEKEQRPINIVDIGASYGIISTLLLHDLTMAQL IDFFIERDGAQEPTWAEIERFYKHQDIRHTEYKFYLSDNSKPAMDFAERVQVCEKAYCFDMRHEPLPEELKHIVETTDLF IATGSLGYIGEYFFQQIFPIISHKSLSPLFAFVIYRAFYSSEINKVFQDYDYTLLKSSVPFKKGRKFASVLEQQNTIESL HQKNINTVGLEDEGFYACEFYFGVPVLEKERLYSWLRQEDLKY
Sequences:
>Translated_283_residues MDISKKANWSEVYVQPTPASYLQIVSQQEYRVPDYGIRYLRPLLKMLYEKEQRPINIVDIGASYGIISTLLLHDLTMAQL IDFFIERDGAQEPTWAEIERFYKHQDIRHTEYKFYLSDNSKPAMDFAERVQVCEKAYCFDMRHEPLPEELKHIVETTDLF IATGSLGYIGEYFFQQIFPIISHKSLSPLFAFVIYRAFYSSEINKVFQDYDYTLLKSSVPFKKGRKFASVLEQQNTIESL HQKNINTVGLEDEGFYACEFYFGVPVLEKERLYSWLRQEDLKY >Mature_283_residues MDISKKANWSEVYVQPTPASYLQIVSQQEYRVPDYGIRYLRPLLKMLYEKEQRPINIVDIGASYGIISTLLLHDLTMAQL IDFFIERDGAQEPTWAEIERFYKHQDIRHTEYKFYLSDNSKPAMDFAERVQVCEKAYCFDMRHEPLPEELKHIVETTDLF IATGSLGYIGEYFFQQIFPIISHKSLSPLFAFVIYRAFYSSEINKVFQDYDYTLLKSSVPFKKGRKFASVLEQQNTIESL HQKNINTVGLEDEGFYACEFYFGVPVLEKERLYSWLRQEDLKY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33436; Mature: 33436
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDISKKANWSEVYVQPTPASYLQIVSQQEYRVPDYGIRYLRPLLKMLYEKEQRPINIVDI CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC GASYGIISTLLLHDLTMAQLIDFFIERDGAQEPTWAEIERFYKHQDIRHTEYKFYLSDNS CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC KPAMDFAERVQVCEKAYCFDMRHEPLPEELKHIVETTDLFIATGSLGYIGEYFFQQIFPI CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHH ISHKSLSPLFAFVIYRAFYSSEINKVFQDYDYTLLKSSVPFKKGRKFASVLEQQNTIESL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH HQKNINTVGLEDEGFYACEFYFGVPVLEKERLYSWLRQEDLKY HHCCCCEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MDISKKANWSEVYVQPTPASYLQIVSQQEYRVPDYGIRYLRPLLKMLYEKEQRPINIVDI CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC GASYGIISTLLLHDLTMAQLIDFFIERDGAQEPTWAEIERFYKHQDIRHTEYKFYLSDNS CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC KPAMDFAERVQVCEKAYCFDMRHEPLPEELKHIVETTDLFIATGSLGYIGEYFFQQIFPI CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHH ISHKSLSPLFAFVIYRAFYSSEINKVFQDYDYTLLKSSVPFKKGRKFASVLEQQNTIESL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH HQKNINTVGLEDEGFYACEFYFGVPVLEKERLYSWLRQEDLKY HHCCCCEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA