| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is pan [H]
Identifier: 113477478
GI number: 113477478
Start: 6261961
End: 6262860
Strand: Reverse
Name: pan [H]
Synonym: Tery_4054
Alternate gene names: 113477478
Gene position: 6262860-6261961 (Counterclockwise)
Preceding gene: 113477480
Following gene: 113477477
Centisome position: 80.81
GC content: 30.89
Gene sequence:
>900_bases ATGAAATTTGAACTAGTCAAGGAGAAAAACAAGTCTAATGCCAAAGATGAAGTTAGTAGTTTACTCGAAACACCTAAATG GACGTTAGATGAAATAGCTTTGTCAAAAACTACAATTGAGCAAATTAAAGAAATGATTGCTTATGTAAAAAATCGGGATA AATTGTTACTTGAATGGGAATTTAATCGTTTTCTCAAAACAGGTAATGGTTTAAGCATCAACTTTTTTGGATTACCAGGT ACAGGAAAAAGCATTACTGCTGAAGCCATTGCCAAAAAGTTAGAAACTCAGATCATCAAGGTTAATTATGGAGAATTAGA ATCTGAATTAGTAGGTGGTACATCTAAGAATTTATCAAAGGTTTTCAAGCTAGCTGAAGAAAATCAGAGCTTATTATTTT TTGATGAAGCTGATGCTGTATTAAGTAAAAGAATTTCCAACTTATCCCAAGCAGCAGATCATGGTGTTAACTCTGCCAAA AGCACCTTATTAACATTGATGGATAAGTTTAATGGCGTAATTATATTTGCCACAAACTTATTTGAAAATTATGATGAGGC TTTTTTAAGGAGAATTATTTTTAATGTTGAGTTTCCCGTACCAGATATAGAAATGAGAACTCAACTTTGGCAATTTCATA TATCTGAAAAAGTGCCTAAAAATATCAGTTATGAAAGAGCGGCTGAAATTAGTGAAGGATTATGTGGTGGAGATATTAGG AACATCACAATTAAGCTAGGATTAAAATTGCTAGTTGGTAAAGTAAAAGTTATTGATGAAGAAGTTATAAATGAAGAAAT CGACAAATATAAAACTATCAAACTGCGTCACAAAAAAATTAATTTAGCAGAAACAGTTGTTGTAGAAAACGGAAATAATT CAAATTTAAAGGAGGAATAA
Upstream 100 bases:
>100_bases TTTACACTATTATTAAGCCTTATTTTTATTTAGAATAGTATTGTTTGCTGTTATAAAAATCTCTAACAATGGCAAAATAA AGCCAACAGAAAATCAAACC
Downstream 100 bases:
>100_bases ATTATGCCGATAGATCCTATAACTTGGACAATTATAGGTTTAAGTTTTTTTGGTGGTGCTGCTGTTGGTTATTTTTGGGA TGACATCACAGCTTGGTTTA
Product: AAA ATPase
Products: NA
Alternate protein names: PAN; Proteasomal ATPase; Proteasome regulatory ATPase; Proteasome regulatory particle [H]
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MKFELVKEKNKSNAKDEVSSLLETPKWTLDEIALSKTTIEQIKEMIAYVKNRDKLLLEWEFNRFLKTGNGLSINFFGLPG TGKSITAEAIAKKLETQIIKVNYGELESELVGGTSKNLSKVFKLAEENQSLLFFDEADAVLSKRISNLSQAADHGVNSAK STLLTLMDKFNGVIIFATNLFENYDEAFLRRIIFNVEFPVPDIEMRTQLWQFHISEKVPKNISYERAAEISEGLCGGDIR NITIKLGLKLLVGKVKVIDEEVINEEIDKYKTIKLRHKKINLAETVVVENGNNSNLKEE
Sequences:
>Translated_299_residues MKFELVKEKNKSNAKDEVSSLLETPKWTLDEIALSKTTIEQIKEMIAYVKNRDKLLLEWEFNRFLKTGNGLSINFFGLPG TGKSITAEAIAKKLETQIIKVNYGELESELVGGTSKNLSKVFKLAEENQSLLFFDEADAVLSKRISNLSQAADHGVNSAK STLLTLMDKFNGVIIFATNLFENYDEAFLRRIIFNVEFPVPDIEMRTQLWQFHISEKVPKNISYERAAEISEGLCGGDIR NITIKLGLKLLVGKVKVIDEEVINEEIDKYKTIKLRHKKINLAETVVVENGNNSNLKEE >Mature_299_residues MKFELVKEKNKSNAKDEVSSLLETPKWTLDEIALSKTTIEQIKEMIAYVKNRDKLLLEWEFNRFLKTGNGLSINFFGLPG TGKSITAEAIAKKLETQIIKVNYGELESELVGGTSKNLSKVFKLAEENQSLLFFDEADAVLSKRISNLSQAADHGVNSAK STLLTLMDKFNGVIIFATNLFENYDEAFLRRIIFNVEFPVPDIEMRTQLWQFHISEKVPKNISYERAAEISEGLCGGDIR NITIKLGLKLLVGKVKVIDEEVINEEIDKYKTIKLRHKKINLAETVVVENGNNSNLKEE
Specific function: ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C- terminus, thereb
COG id: COG0464
COG function: function code O; ATPases of the AAA+ class
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AAA ATPase family [H]
Homologues:
Organism=Homo sapiens, GI4506209, Length=265, Percent_Identity=28.3018867924528, Blast_Score=104, Evalue=1e-22, Organism=Homo sapiens, GI24430151, Length=238, Percent_Identity=28.1512605042017, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI24497435, Length=254, Percent_Identity=26.3779527559055, Blast_Score=91, Evalue=9e-19, Organism=Homo sapiens, GI21361144, Length=185, Percent_Identity=29.7297297297297, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI6005942, Length=250, Percent_Identity=28.8, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI195539395, Length=183, Percent_Identity=28.9617486338798, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI5729991, Length=205, Percent_Identity=29.7560975609756, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI89064750, Length=205, Percent_Identity=29.7560975609756, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI24430155, Length=205, Percent_Identity=29.7560975609756, Blast_Score=79, Evalue=7e-15, Organism=Homo sapiens, GI24497618, Length=234, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI21327685, Length=235, Percent_Identity=29.3617021276596, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI7657689, Length=235, Percent_Identity=29.3617021276596, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI14149767, Length=203, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI62177112, Length=203, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI5901990, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI7019569, Length=194, Percent_Identity=30.4123711340206, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI229577436, Length=221, Percent_Identity=28.0542986425339, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI153792536, Length=235, Percent_Identity=31.063829787234, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI17865802, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI31377644, Length=217, Percent_Identity=25.3456221198157, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI1789568, Length=244, Percent_Identity=26.6393442622951, Blast_Score=75, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17563248, Length=260, Percent_Identity=28.0769230769231, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17505546, Length=247, Percent_Identity=27.1255060728745, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI25144278, Length=245, Percent_Identity=29.3877551020408, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI25144281, Length=245, Percent_Identity=29.3877551020408, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17563250, Length=242, Percent_Identity=28.099173553719, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17554786, Length=252, Percent_Identity=27.7777777777778, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI71987364, Length=199, Percent_Identity=29.1457286432161, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71987372, Length=199, Percent_Identity=29.1457286432161, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17531535, Length=247, Percent_Identity=29.9595141700405, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17541224, Length=218, Percent_Identity=27.9816513761468, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17541226, Length=218, Percent_Identity=27.9816513761468, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17508701, Length=221, Percent_Identity=27.6018099547511, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17554264, Length=220, Percent_Identity=30, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17532375, Length=250, Percent_Identity=27.6, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193206116, Length=181, Percent_Identity=34.2541436464088, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193206114, Length=181, Percent_Identity=34.2541436464088, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI133931034, Length=181, Percent_Identity=34.2541436464088, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI86561515, Length=250, Percent_Identity=29.2, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17554784, Length=183, Percent_Identity=30.6010928961749, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71994521, Length=178, Percent_Identity=30.3370786516854, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI32563584, Length=185, Percent_Identity=31.8918918918919, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508421, Length=185, Percent_Identity=31.8918918918919, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI133901662, Length=256, Percent_Identity=26.5625, Blast_Score=64, Evalue=8e-11, Organism=Caenorhabditis elegans, GI133901658, Length=255, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6322704, Length=258, Percent_Identity=28.2945736434109, Blast_Score=99, Evalue=7e-22, Organism=Saccharomyces cerevisiae, GI6321390, Length=255, Percent_Identity=28.6274509803922, Blast_Score=99, Evalue=9e-22, Organism=Saccharomyces cerevisiae, GI6324833, Length=183, Percent_Identity=31.6939890710383, Blast_Score=89, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6320077, Length=248, Percent_Identity=27.8225806451613, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6321709, Length=234, Percent_Identity=29.4871794871795, Blast_Score=82, Evalue=7e-17, Organism=Saccharomyces cerevisiae, GI6320197, Length=242, Percent_Identity=26.4462809917355, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324691, Length=186, Percent_Identity=27.9569892473118, Blast_Score=79, Evalue=9e-16, Organism=Saccharomyces cerevisiae, GI6325431, Length=175, Percent_Identity=30.8571428571429, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6320602, Length=132, Percent_Identity=35.6060606060606, Blast_Score=75, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6325183, Length=221, Percent_Identity=24.4343891402715, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322651, Length=252, Percent_Identity=28.1746031746032, Blast_Score=69, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6322994, Length=121, Percent_Identity=34.7107438016529, Blast_Score=66, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6323429, Length=274, Percent_Identity=25.9124087591241, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323736, Length=226, Percent_Identity=27.8761061946903, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6321465, Length=217, Percent_Identity=26.7281105990783, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI17137738, Length=260, Percent_Identity=26.9230769230769, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI19920408, Length=255, Percent_Identity=28.2352941176471, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI24649446, Length=278, Percent_Identity=28.4172661870504, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24640100, Length=183, Percent_Identity=30.6010928961749, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI24651451, Length=255, Percent_Identity=27.4509803921569, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24663015, Length=183, Percent_Identity=31.1475409836066, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI161076486, Length=249, Percent_Identity=28.5140562248996, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI17137560, Length=249, Percent_Identity=28.5140562248996, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI161076488, Length=247, Percent_Identity=28.3400809716599, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI17738151, Length=182, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24658770, Length=248, Percent_Identity=27.0161290322581, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI18860063, Length=201, Percent_Identity=27.8606965174129, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI24644145, Length=208, Percent_Identity=29.8076923076923, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24581396, Length=175, Percent_Identity=29.7142857142857, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24656825, Length=199, Percent_Identity=28.1407035175879, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24656820, Length=199, Percent_Identity=28.1407035175879, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281361487, Length=135, Percent_Identity=34.0740740740741, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI20129529, Length=242, Percent_Identity=26.0330578512397, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24665814, Length=177, Percent_Identity=30.5084745762712, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI28574878, Length=177, Percent_Identity=30.5084745762712, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI18859657, Length=282, Percent_Identity=25.886524822695, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24652279, Length=177, Percent_Identity=30.5084745762712, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI21355121, Length=182, Percent_Identity=30.2197802197802, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI281360142, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI21357333, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI281360136, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24644411, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI281360146, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI281360138, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI281360144, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI281360140, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24639486, Length=249, Percent_Identity=28.1124497991968, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI28571849, Length=247, Percent_Identity=28.3400809716599, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI28571847, Length=247, Percent_Identity=28.3400809716599, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005937 - InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR003960 [H]
Pfam domain/function: PF00004 AAA [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 33862; Mature: 33862
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFELVKEKNKSNAKDEVSSLLETPKWTLDEIALSKTTIEQIKEMIAYVKNRDKLLLEWE CCCCHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE FNRFLKTGNGLSINFFGLPGTGKSITAEAIAKKLETQIIKVNYGELESELVGGTSKNLSK HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEEEECCHHHHHHHCCCCHHHHH VFKLAEENQSLLFFDEADAVLSKRISNLSQAADHGVNSAKSTLLTLMDKFNGVIIFATNL HHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEHHH FENYDEAFLRRIIFNVEFPVPDIEMRTQLWQFHISEKVPKNISYERAAEISEGLCGGDIR HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHH NITIKLGLKLLVGKVKVIDEEVINEEIDKYKTIKLRHKKINLAETVVVENGNNSNLKEE EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHEECEEEEEEEECCCCCCCCCC >Mature Secondary Structure MKFELVKEKNKSNAKDEVSSLLETPKWTLDEIALSKTTIEQIKEMIAYVKNRDKLLLEWE CCCCHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE FNRFLKTGNGLSINFFGLPGTGKSITAEAIAKKLETQIIKVNYGELESELVGGTSKNLSK HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHEEEEEECCHHHHHHHCCCCHHHHH VFKLAEENQSLLFFDEADAVLSKRISNLSQAADHGVNSAKSTLLTLMDKFNGVIIFATNL HHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEHHH FENYDEAFLRRIIFNVEFPVPDIEMRTQLWQFHISEKVPKNISYERAAEISEGLCGGDIR HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHH NITIKLGLKLLVGKVKVIDEEVINEEIDKYKTIKLRHKKINLAETVVVENGNNSNLKEE EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHEECEEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Metalloendopeptidases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11930014 [H]