| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477284
Identifier: 113477284
GI number: 113477284
Start: 5904039
End: 5905364
Strand: Reverse
Name: 113477284
Synonym: Tery_3829
Alternate gene names: NA
Gene position: 5905364-5904039 (Counterclockwise)
Preceding gene: 113477286
Following gene: 113477283
Centisome position: 76.2
GC content: 34.69
Gene sequence:
>1326_bases ATGTCACGTTTAAATAGCCGAGCCTATAAACTATTAAAAGTAGAAGTTGACAAACGTGCCAAAGAAGATTTGGTTGGGGA AGTGGGAAAAAAAATAGTAATGAAAAGACTGGATAAGTTACGATTTCAATCAGGAGAGACCCTAAAAGTAGAAGAATTAA GTTATATAGTAAAAGACCAATTTCCTAATTTTAGTGACACAGTTATTCAGAAAGCAATTAAAATAAATAAGCAACCTAAA ATATTAAGTAAAATTATGTGGATACCTGCTGCATTAGTGGGAATGGCAGGGATCGTTTGGGTAGCAAATTTACCCTATCC CATGATTCGTAAACCTGTGTCTAGAGTAGCACCAATAGTTTTGCTACCAAGCTATATAAATATGGATTATAACTATAGAG AAGCGATCGCTAATATTGAACAAGCAGATCAACTAATTAATAAAGCAACTTCCAGTGCAGATATTAATTTAGGCGCTAAT AAAGTTGCTTTAGCACAGAAGCATCTTAATGAATTGCCAGTATGGTTTTTAGATTTTTATCCTAAAAGATATTGTACGTT TTTCAGTTGTTCTTGGAAATTCACATTAGATGAATTTGAAACCGCAAGAAAACAGGTAGGGCGAATGCAGGCAAAGGTAT TTCAAGAAAACAATGCTCAAACATTCTTAGCGGAGGCGGAACAAACAATTGCCACTGCTAAACAACAATATCTGGAAGCT ACAACCTCAACAGAAAAACAGCAGGCGATCGCTAACTGGCAAAGTGGAATAGATAGGTTAGCACAAATTCCACCTACTAC TGTTGCTAAAAAAATAGCACAACCACAATTAGCAGCAGCTAAACGAGATTTTGAGAAAGAGGTAGGTTTAGCAGATGGTA ATAAACTCAGTTTCACTTTTATAGAAGTGGCAAAAAAATTTGGTTTAAAGGCGGCTGAAGCTGCTCAAAATGGACCCCAT TCAGATCAACGATGGCAAGTAATAGTAGATTTATGGGAGCAAGCAATTAATCAATTACAGAAAATATCAGCAGATAATCC TAGTTATTTGGCAGCTCAGAGCAAAATAGCAGAATATCAGCTTAACCTCGCTAATGTGAAAATGCGATTACAAGCAGAAA GGGACTCAGGAACAGCTTTTAAGCGGGGTAAAGATTTAATTGCAGATTGGAAAAAGTCTGCAATTAATAATTCTGATCGA GGTTTACTTGCTAGTAAGTTACAAGAAATTATTAATCAGTTAGAAAATGTAAAACCAGAAACAACTTTTTATCAACAAGC TCAAGAATTATTGAAATTTGCAAAAGATAAACAGAAAAATTTATAA
Upstream 100 bases:
>100_bases AGGCAAACATTGGGTATATCTCCTATTATATGAAATTGGATATTTAACTGATGAGTCATCAAAATGTTACAATATAAGTA ATAAATCTAGAGGTAAAAAT
Downstream 100 bases:
>100_bases CTTGAAATTAGGAGATAAAATAGGGATTTTGGCAAGGATGTAGGGATTAACTTCTTAGCTCTAAATATTTAGGTGAGAGA TACTTGTAAATCTTCTAAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MSRLNSRAYKLLKVEVDKRAKEDLVGEVGKKIVMKRLDKLRFQSGETLKVEELSYIVKDQFPNFSDTVIQKAIKINKQPK ILSKIMWIPAALVGMAGIVWVANLPYPMIRKPVSRVAPIVLLPSYINMDYNYREAIANIEQADQLINKATSSADINLGAN KVALAQKHLNELPVWFLDFYPKRYCTFFSCSWKFTLDEFETARKQVGRMQAKVFQENNAQTFLAEAEQTIATAKQQYLEA TTSTEKQQAIANWQSGIDRLAQIPPTTVAKKIAQPQLAAAKRDFEKEVGLADGNKLSFTFIEVAKKFGLKAAEAAQNGPH SDQRWQVIVDLWEQAINQLQKISADNPSYLAAQSKIAEYQLNLANVKMRLQAERDSGTAFKRGKDLIADWKKSAINNSDR GLLASKLQEIINQLENVKPETTFYQQAQELLKFAKDKQKNL
Sequences:
>Translated_441_residues MSRLNSRAYKLLKVEVDKRAKEDLVGEVGKKIVMKRLDKLRFQSGETLKVEELSYIVKDQFPNFSDTVIQKAIKINKQPK ILSKIMWIPAALVGMAGIVWVANLPYPMIRKPVSRVAPIVLLPSYINMDYNYREAIANIEQADQLINKATSSADINLGAN KVALAQKHLNELPVWFLDFYPKRYCTFFSCSWKFTLDEFETARKQVGRMQAKVFQENNAQTFLAEAEQTIATAKQQYLEA TTSTEKQQAIANWQSGIDRLAQIPPTTVAKKIAQPQLAAAKRDFEKEVGLADGNKLSFTFIEVAKKFGLKAAEAAQNGPH SDQRWQVIVDLWEQAINQLQKISADNPSYLAAQSKIAEYQLNLANVKMRLQAERDSGTAFKRGKDLIADWKKSAINNSDR GLLASKLQEIINQLENVKPETTFYQQAQELLKFAKDKQKNL >Mature_440_residues SRLNSRAYKLLKVEVDKRAKEDLVGEVGKKIVMKRLDKLRFQSGETLKVEELSYIVKDQFPNFSDTVIQKAIKINKQPKI LSKIMWIPAALVGMAGIVWVANLPYPMIRKPVSRVAPIVLLPSYINMDYNYREAIANIEQADQLINKATSSADINLGANK VALAQKHLNELPVWFLDFYPKRYCTFFSCSWKFTLDEFETARKQVGRMQAKVFQENNAQTFLAEAEQTIATAKQQYLEAT TSTEKQQAIANWQSGIDRLAQIPPTTVAKKIAQPQLAAAKRDFEKEVGLADGNKLSFTFIEVAKKFGLKAAEAAQNGPHS DQRWQVIVDLWEQAINQLQKISADNPSYLAAQSKIAEYQLNLANVKMRLQAERDSGTAFKRGKDLIADWKKSAINNSDRG LLASKLQEIINQLENVKPETTFYQQAQELLKFAKDKQKNL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49963; Mature: 49832
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLNSRAYKLLKVEVDKRAKEDLVGEVGKKIVMKRLDKLRFQSGETLKVEELSYIVKDQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHC FPNFSDTVIQKAIKINKQPKILSKIMWIPAALVGMAGIVWVANLPYPMIRKPVSRVAPIV CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCE LLPSYINMDYNYREAIANIEQADQLINKATSSADINLGANKVALAQKHLNELPVWFLDFY EEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHC PKRYCTFFSCSWKFTLDEFETARKQVGRMQAKVFQENNAQTFLAEAEQTIATAKQQYLEA HHHHEEEEECEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH TTSTEKQQAIANWQSGIDRLAQIPPTTVAKKIAQPQLAAAKRDFEKEVGLADGNKLSFTF HCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHH IEVAKKFGLKAAEAAQNGPHSDQRWQVIVDLWEQAINQLQKISADNPSYLAAQSKIAEYQ HHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LNLANVKMRLQAERDSGTAFKRGKDLIADWKKSAINNSDRGLLASKLQEIINQLENVKPE HHHHHEEEEEEECCCCCCHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC TTFYQQAQELLKFAKDKQKNL HHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SRLNSRAYKLLKVEVDKRAKEDLVGEVGKKIVMKRLDKLRFQSGETLKVEELSYIVKDQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHC FPNFSDTVIQKAIKINKQPKILSKIMWIPAALVGMAGIVWVANLPYPMIRKPVSRVAPIV CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCE LLPSYINMDYNYREAIANIEQADQLINKATSSADINLGANKVALAQKHLNELPVWFLDFY EEHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHC PKRYCTFFSCSWKFTLDEFETARKQVGRMQAKVFQENNAQTFLAEAEQTIATAKQQYLEA HHHHEEEEECEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH TTSTEKQQAIANWQSGIDRLAQIPPTTVAKKIAQPQLAAAKRDFEKEVGLADGNKLSFTF HCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEHHH IEVAKKFGLKAAEAAQNGPHSDQRWQVIVDLWEQAINQLQKISADNPSYLAAQSKIAEYQ HHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LNLANVKMRLQAERDSGTAFKRGKDLIADWKKSAINNSDRGLLASKLQEIINQLENVKPE HHHHHEEEEEEECCCCCCHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC TTFYQQAQELLKFAKDKQKNL HHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA