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The map label for this gene is ydiS [C]

Identifier: 113477236

GI number: 113477236

Start: 5806790

End: 5807896

Strand: Reverse

Name: ydiS [C]

Synonym: Tery_3777

Alternate gene names: 113477236

Gene position: 5807896-5806790 (Counterclockwise)

Preceding gene: 113477237

Following gene: 113477233

Centisome position: 74.94

GC content: 37.22

Gene sequence:

>1107_bases
ATGTTTGATTGTATAATTATAGGGGCAGGTCCAGCAGGAAGTACAGCAGCTTATCATTTGGCTAAGAAAGGACGTTCTGT
TTTAGTGATAGAAAAGGAATCTTTCCCTAGAGTTAAAGCTTGTGGTGGTGGGGTATCTCCAGCGATCGCTCAATGGTTTG
ACTTTGATTTAACTCCAGCTATTTCTCTCAAGGTTAATAAAATTCGTTATACATGGAAATTAGAAGACCCTATTGAAGCA
GATTTACCCGTTCCTATGTGGATGGTAAAACGAGATGTTTTCGACTATTTTCTCATCCAAAAAGCTACAGAACAAGGTGC
AGAATTAAGAGACAAAACAGAAGTTACAGGTATTGAATTTAAACGTGATTCTTGGGAAGTTAAAACAATTAAGGAACCTG
TTGTTGGTCGTTATTTAATTGCTGCTGATGGAGCCAAAGGACCAATGTCTAAATGGTTAGGTTTTAAAGAATCTAAAAAA
CGGCAAAGTCTAGTTTTTGAAGCACCATTAAATGAGTCAAATAAAAAAGCTACCTTTGAATTTGGTTCAGTTAAAAATGG
TAATATTTGGGGTTTCCCCAAAGCAGATTCCTGCTCTATTAGTATTGCGACTTTTAGGGGCGGGGAATCCAAAAATCTAT
CTAAAGATTTGATGGGATACGTTCAACAAATTGGTGTAAATGTAAGTCAAAATCAATTATTAGAACATTATATTTCTCTA
TGGGATGGAGAGAAAAATCTTCATACTCAAAATGCGATATTGGCAGGAGAAGCAGCAAGTTTATCAGACCCTTTATCAGC
AGAAGGAATTCGCCCTTCAATTTTTAGTGGTGTCAAAGCCGCTGAAGCTATAGATGAAGCTTTAGGTGGTAATGGGGATG
CTCTGAAAAAATACACTCAGATAGTTAATGAGGAATGGGGTACAGATATGGCTTGGGCGGGTCGTTTAGCAGGAGCATTT
TATCGGTTTCCTAAGGTAGCTTATAAAGTGGGGGTTAAGTTACCAGCAGCTACTACAGTAATGAGTAAAATTATGTGTGG
AGAAATGCGTTATGCGGATATTGCTAATACTGCAATTAAAAAGCTAACTAGTAGTTTTTTACCATGA

Upstream 100 bases:

>100_bases
GTCAATTATTTATCTATATCTATTAGAAACTGCCTCTAATTAACTGACTTTTTCCTCTTCTAGGAAATTAGAAAAAATTT
CAGTATCAAAGTAATAAAAA

Downstream 100 bases:

>100_bases
ATAGATTAGGTTAAATTTCTATTTCCTAGAGTATAGCTAATTTATAAAGTAAAGAAGAAGAAGCTTAATTTTTTACATAA
TTCCCTAATTGCAATTTCAT

Product: geranylgeranyl reductase

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MFDCIIIGAGPAGSTAAYHLAKKGRSVLVIEKESFPRVKACGGGVSPAIAQWFDFDLTPAISLKVNKIRYTWKLEDPIEA
DLPVPMWMVKRDVFDYFLIQKATEQGAELRDKTEVTGIEFKRDSWEVKTIKEPVVGRYLIAADGAKGPMSKWLGFKESKK
RQSLVFEAPLNESNKKATFEFGSVKNGNIWGFPKADSCSISIATFRGGESKNLSKDLMGYVQQIGVNVSQNQLLEHYISL
WDGEKNLHTQNAILAGEAASLSDPLSAEGIRPSIFSGVKAAEAIDEALGGNGDALKKYTQIVNEEWGTDMAWAGRLAGAF
YRFPKVAYKVGVKLPAATTVMSKIMCGEMRYADIANTAIKKLTSSFLP

Sequences:

>Translated_368_residues
MFDCIIIGAGPAGSTAAYHLAKKGRSVLVIEKESFPRVKACGGGVSPAIAQWFDFDLTPAISLKVNKIRYTWKLEDPIEA
DLPVPMWMVKRDVFDYFLIQKATEQGAELRDKTEVTGIEFKRDSWEVKTIKEPVVGRYLIAADGAKGPMSKWLGFKESKK
RQSLVFEAPLNESNKKATFEFGSVKNGNIWGFPKADSCSISIATFRGGESKNLSKDLMGYVQQIGVNVSQNQLLEHYISL
WDGEKNLHTQNAILAGEAASLSDPLSAEGIRPSIFSGVKAAEAIDEALGGNGDALKKYTQIVNEEWGTDMAWAGRLAGAF
YRFPKVAYKVGVKLPAATTVMSKIMCGEMRYADIANTAIKKLTSSFLP
>Mature_368_residues
MFDCIIIGAGPAGSTAAYHLAKKGRSVLVIEKESFPRVKACGGGVSPAIAQWFDFDLTPAISLKVNKIRYTWKLEDPIEA
DLPVPMWMVKRDVFDYFLIQKATEQGAELRDKTEVTGIEFKRDSWEVKTIKEPVVGRYLIAADGAKGPMSKWLGFKESKK
RQSLVFEAPLNESNKKATFEFGSVKNGNIWGFPKADSCSISIATFRGGESKNLSKDLMGYVQQIGVNVSQNQLLEHYISL
WDGEKNLHTQNAILAGEAASLSDPLSAEGIRPSIFSGVKAAEAIDEALGGNGDALKKYTQIVNEEWGTDMAWAGRLAGAF
YRFPKVAYKVGVKLPAATTVMSKIMCGEMRYADIANTAIKKLTSSFLP

Specific function: Probably Accepts Electrons From Ydiq/Ydir And Reduces A Quinone. [C]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. ChlP subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011777
- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.5.5.- [C]

Molecular weight: Translated: 40354; Mature: 40354

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDCIIIGAGPAGSTAAYHLAKKGRSVLVIEKESFPRVKACGGGVSPAIAQWFDFDLTPA
CCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHCCCCCCE
ISLKVNKIRYTWKLEDPIEADLPVPMWMVKRDVFDYFLIQKATEQGAELRDKTEVTGIEF
EEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEE
KRDSWEVKTIKEPVVGRYLIAADGAKGPMSKWLGFKESKKRQSLVFEAPLNESNKKATFE
ECCCCCCHHHHCCCCCEEEEEECCCCCCHHHHCCCCHHHHHHCEEEECCCCCCCCEEEEE
FGSVKNGNIWGFPKADSCSISIATFRGGESKNLSKDLMGYVQQIGVNVSQNQLLEHYISL
ECCCCCCCEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
WDGEKNLHTQNAILAGEAASLSDPLSAEGIRPSIFSGVKAAEAIDEALGGNGDALKKYTQ
HCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IVNEEWGTDMAWAGRLAGAFYRFPKVAYKVGVKLPAATTVMSKIMCGEMRYADIANTAIK
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
KLTSSFLP
HHHHHCCC
>Mature Secondary Structure
MFDCIIIGAGPAGSTAAYHLAKKGRSVLVIEKESFPRVKACGGGVSPAIAQWFDFDLTPA
CCEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHCCCCCCE
ISLKVNKIRYTWKLEDPIEADLPVPMWMVKRDVFDYFLIQKATEQGAELRDKTEVTGIEF
EEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCEEE
KRDSWEVKTIKEPVVGRYLIAADGAKGPMSKWLGFKESKKRQSLVFEAPLNESNKKATFE
ECCCCCCHHHHCCCCCEEEEEECCCCCCHHHHCCCCHHHHHHCEEEECCCCCCCCEEEEE
FGSVKNGNIWGFPKADSCSISIATFRGGESKNLSKDLMGYVQQIGVNVSQNQLLEHYISL
ECCCCCCCEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
WDGEKNLHTQNAILAGEAASLSDPLSAEGIRPSIFSGVKAAEAIDEALGGNGDALKKYTQ
HCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IVNEEWGTDMAWAGRLAGAFYRFPKVAYKVGVKLPAATTVMSKIMCGEMRYADIANTAIK
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
KLTSSFLP
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9063468 [H]