| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477102
Identifier: 113477102
GI number: 113477102
Start: 5563176
End: 5563982
Strand: Reverse
Name: 113477102
Synonym: Tery_3619
Alternate gene names: NA
Gene position: 5563982-5563176 (Counterclockwise)
Preceding gene: 113477103
Following gene: 113477099
Centisome position: 71.79
GC content: 37.3
Gene sequence:
>807_bases ATGATAAAGTTTTTTTCAAAAAGTTTTTTTGTCTCAATTGCATCAATCTTCCTGGCATTATCTACTCTGGCTCTAACTCC AACAGTTGCCCAAGCTTATAACAATCCAGATTTACTACCTAAAGAGCAAACACCAATAATTGACCTAGCCAGGTCGTTAA CAGAAATTCAAGAAAACTTACTAGCCAAAGACTTAGAGAAATTTGAAACAGAAACTGGTTGGAAACTGAGAGTTTTAACT CAATTCGACCGTACTCCTGGTAGAGCAGTTAAAGATTTTTGGGAACTTGATAGTAAAAGTGTATTGTTAGTAGCTGACCC CCGTGGTGGTAATATCCTTAATTTTAATGTGGGTCGCGGTCTTTACCAATTCCTTCCCAGGACATTTTGGGTAGAGTTGC AAACTCGATATGGTAATCAATTTTTTGTGCGAGACCAAGGTGAAGATCAATCTATTATTCAATCATTAGAATCTATCAAA ACTTGTTTACGCCAGGGTGGTTGTAATGTTGTACCTGGTTTACCACAGGAGCAGTGGATTTTAACTTTGATTACATCAGT TATTGGCGGAGTAATTTGTGGCTTTGCAGCTCAACCTCGTAAACCAAACCAAGCTTTTTCTTGGCAGTGGGCATTAATAT TTTCTCCATTGTGGGGAATTTTGTTTATAGCTTTTGGAATTGGTCCAGTAGTATCAAGAACTTCAGATTGGTTGCCATTG ACTCGTAATGTTGTAGGTTTTCTTATTGGTGCCTTGGTTGCTTATCTAACTCCTTTTTTAAATCAATCTTCTCCTTCTGA AACTTAA
Upstream 100 bases:
>100_bases TTGTGAGTTAAAGTAAATAATTGTAAAGAAATATAATTTTTTTATTTCTTTATTTAGTTAAAGTATCTATTGTCCACCTT TTGGATTAAAAAGAAACAAA
Downstream 100 bases:
>100_bases AATTTAAGGTAGTAGGAAGTAATAAGTACAGAATATATCTCCTCTTCTGTTATTAAAAAAGTTTAAGAAAAATTTCTTGA AATTTAGTATAATATTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MIKFFSKSFFVSIASIFLALSTLALTPTVAQAYNNPDLLPKEQTPIIDLARSLTEIQENLLAKDLEKFETETGWKLRVLT QFDRTPGRAVKDFWELDSKSVLLVADPRGGNILNFNVGRGLYQFLPRTFWVELQTRYGNQFFVRDQGEDQSIIQSLESIK TCLRQGGCNVVPGLPQEQWILTLITSVIGGVICGFAAQPRKPNQAFSWQWALIFSPLWGILFIAFGIGPVVSRTSDWLPL TRNVVGFLIGALVAYLTPFLNQSSPSET
Sequences:
>Translated_268_residues MIKFFSKSFFVSIASIFLALSTLALTPTVAQAYNNPDLLPKEQTPIIDLARSLTEIQENLLAKDLEKFETETGWKLRVLT QFDRTPGRAVKDFWELDSKSVLLVADPRGGNILNFNVGRGLYQFLPRTFWVELQTRYGNQFFVRDQGEDQSIIQSLESIK TCLRQGGCNVVPGLPQEQWILTLITSVIGGVICGFAAQPRKPNQAFSWQWALIFSPLWGILFIAFGIGPVVSRTSDWLPL TRNVVGFLIGALVAYLTPFLNQSSPSET >Mature_268_residues MIKFFSKSFFVSIASIFLALSTLALTPTVAQAYNNPDLLPKEQTPIIDLARSLTEIQENLLAKDLEKFETETGWKLRVLT QFDRTPGRAVKDFWELDSKSVLLVADPRGGNILNFNVGRGLYQFLPRTFWVELQTRYGNQFFVRDQGEDQSIIQSLESIK TCLRQGGCNVVPGLPQEQWILTLITSVIGGVICGFAAQPRKPNQAFSWQWALIFSPLWGILFIAFGIGPVVSRTSDWLPL TRNVVGFLIGALVAYLTPFLNQSSPSET
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30022; Mature: 30022
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKFFSKSFFVSIASIFLALSTLALTPTVAQAYNNPDLLPKEQTPIIDLARSLTEIQENL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH LAKDLEKFETETGWKLRVLTQFDRTPGRAVKDFWELDSKSVLLVADPRGGNILNFNVGRG HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEECCCHH LYQFLPRTFWVELQTRYGNQFFVRDQGEDQSIIQSLESIKTCLRQGGCNVVPGLPQEQWI HHHHCCHHHEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH LTLITSVIGGVICGFAAQPRKPNQAFSWQWALIFSPLWGILFIAFGIGPVVSRTSDWLPL HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH TRNVVGFLIGALVAYLTPFLNQSSPSET HHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MIKFFSKSFFVSIASIFLALSTLALTPTVAQAYNNPDLLPKEQTPIIDLARSLTEIQENL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH LAKDLEKFETETGWKLRVLTQFDRTPGRAVKDFWELDSKSVLLVADPRGGNILNFNVGRG HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEEEECCCHH LYQFLPRTFWVELQTRYGNQFFVRDQGEDQSIIQSLESIKTCLRQGGCNVVPGLPQEQWI HHHHCCHHHEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH LTLITSVIGGVICGFAAQPRKPNQAFSWQWALIFSPLWGILFIAFGIGPVVSRTSDWLPL HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH TRNVVGFLIGALVAYLTPFLNQSSPSET HHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA