| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477099
Identifier: 113477099
GI number: 113477099
Start: 5559755
End: 5560525
Strand: Reverse
Name: 113477099
Synonym: Tery_3616
Alternate gene names: NA
Gene position: 5560525-5559755 (Counterclockwise)
Preceding gene: 113477102
Following gene: 113477093
Centisome position: 71.75
GC content: 38.78
Gene sequence:
>771_bases ATGCAACTATCTTCACATCCAGACCTACCAGAAATGTCACTAAATGTACAAAATACTAATACTTCTGCTCTGAACAACAG GCCATTTTTGACTTGGCAACTAATCATAGATTGGGCAGAAGAACACTACCGTAGTAGAGCTTTCAGCAAAGATGAACGTA TTCCCGCTCGCCCAGGTTTGCTGTATCTAATACAGAAAGGAGCAATTCGTCTGGTAGGTAATGCCAACATAAGTGCCAAT CGAAATGTTAGTAATAATAACCTTAGCAAATCAAAAACAAGTCCAAATTCAGATGAACCTTTTCTAGGATTAGTTGGTGC TGGTCAACCATTTGAACTAATAGCTCAGTCACCATTTACGCTACAAGCTTATGCTCATATCGATAAAACAACTGTACTTT GGATGTATTGGCATGAACTGGATAACTGGCCTCACTTCCGCAGAGAAGTTTTAGACGCTTTTCGCTATCAACATCAAAGG AAGCTTTTGTGGCTAAGTACTCTGGGTCAACGTCGTACTATTGATCGATTATTTGGATTTCTCACACTATTAATTGAAGA ATATGGGCAACCCTGGACTAGTCAAGATAACCTAGAAGTAACAAGTGGTTATTATCTACCTTGGCCTTTGACTCATACTC AAATTGGTAGCGCTATTGGTTCTACCCGTGTAACTGTGACTCGTCTCATAGGTAAATTACGTCAGCAAGGCTTAGTTTAT ATTCAGAATGATAATCTTATTTGTTTGCCAATGGAATCTCAAAACCAATAA
Upstream 100 bases:
>100_bases CTTTTCGCCTTCTAAATTTATAACTTATGCTATATCTGCTCCTATGTCCTTGATCCAATTGTTATTACTTAAGTCCAACT TTTACTAAAACAGAGTAAAA
Downstream 100 bases:
>100_bases AAAATCTAACTAATTTTGAGCATTTTGAGGATGGTATTTTTTTTCAAAATGCTACGTAAACAAAGGTTGTATATGTAATT TTAACTGACTATTTTGGCTG
Product: CRP/FNR family transcriptional regulator
Products: NA
Alternate protein names: Crp Family Transcriptional Regulatory Protein; Transcriptional Regulator CRP Family Protein; Transcriptional Regulator Crp/Fnr Family Protein; CRP Family Transcriptional Regulator; CRP/FNR Family Transcriptional Regulator; Crp/FNR Family Transcriptional Regulator; Crp/Fnr Family Transcriptional Regulator; Transcriptional Regulator Crp/Fnr Family
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MQLSSHPDLPEMSLNVQNTNTSALNNRPFLTWQLIIDWAEEHYRSRAFSKDERIPARPGLLYLIQKGAIRLVGNANISAN RNVSNNNLSKSKTSPNSDEPFLGLVGAGQPFELIAQSPFTLQAYAHIDKTTVLWMYWHELDNWPHFRREVLDAFRYQHQR KLLWLSTLGQRRTIDRLFGFLTLLIEEYGQPWTSQDNLEVTSGYYLPWPLTHTQIGSAIGSTRVTVTRLIGKLRQQGLVY IQNDNLICLPMESQNQ
Sequences:
>Translated_256_residues MQLSSHPDLPEMSLNVQNTNTSALNNRPFLTWQLIIDWAEEHYRSRAFSKDERIPARPGLLYLIQKGAIRLVGNANISAN RNVSNNNLSKSKTSPNSDEPFLGLVGAGQPFELIAQSPFTLQAYAHIDKTTVLWMYWHELDNWPHFRREVLDAFRYQHQR KLLWLSTLGQRRTIDRLFGFLTLLIEEYGQPWTSQDNLEVTSGYYLPWPLTHTQIGSAIGSTRVTVTRLIGKLRQQGLVY IQNDNLICLPMESQNQ >Mature_256_residues MQLSSHPDLPEMSLNVQNTNTSALNNRPFLTWQLIIDWAEEHYRSRAFSKDERIPARPGLLYLIQKGAIRLVGNANISAN RNVSNNNLSKSKTSPNSDEPFLGLVGAGQPFELIAQSPFTLQAYAHIDKTTVLWMYWHELDNWPHFRREVLDAFRYQHQR KLLWLSTLGQRRTIDRLFGFLTLLIEEYGQPWTSQDNLEVTSGYYLPWPLTHTQIGSAIGSTRVTVTRLIGKLRQQGLVY IQNDNLICLPMESQNQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29494; Mature: 29494
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: PS00042 HTH_CRP_1 ; PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLSSHPDLPEMSLNVQNTNTSALNNRPFLTWQLIIDWAEEHYRSRAFSKDERIPARPGL CCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCE LYLIQKGAIRLVGNANISANRNVSNNNLSKSKTSPNSDEPFLGLVGAGQPFELIAQSPFT EEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCE LQAYAHIDKTTVLWMYWHELDNWPHFRREVLDAFRYQHQRKLLWLSTLGQRRTIDRLFGF EEEEEECCCEEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHEEHHHHCCCHHHHHHHHHH LTLLIEEYGQPWTSQDNLEVTSGYYLPWPLTHTQIGSAIGSTRVTVTRLIGKLRQQGLVY HHHHHHHHCCCCCCCCCEEEECCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE IQNDNLICLPMESQNQ EECCCEEEEECCCCCC >Mature Secondary Structure MQLSSHPDLPEMSLNVQNTNTSALNNRPFLTWQLIIDWAEEHYRSRAFSKDERIPARPGL CCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCE LYLIQKGAIRLVGNANISANRNVSNNNLSKSKTSPNSDEPFLGLVGAGQPFELIAQSPFT EEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCCE LQAYAHIDKTTVLWMYWHELDNWPHFRREVLDAFRYQHQRKLLWLSTLGQRRTIDRLFGF EEEEEECCCEEEEEEEEEHHCCCHHHHHHHHHHHHHHHHHHEEHHHHCCCHHHHHHHHHH LTLLIEEYGQPWTSQDNLEVTSGYYLPWPLTHTQIGSAIGSTRVTVTRLIGKLRQQGLVY HHHHHHHHCCCCCCCCCEEEECCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEE IQNDNLICLPMESQNQ EECCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA