| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477077
Identifier: 113477077
GI number: 113477077
Start: 5512695
End: 5513135
Strand: Reverse
Name: 113477077
Synonym: Tery_3584
Alternate gene names: NA
Gene position: 5513135-5512695 (Counterclockwise)
Preceding gene: 113477078
Following gene: 113477076
Centisome position: 71.14
GC content: 27.66
Gene sequence:
>441_bases ATGCCAAATACAGTTCTTTTATCTATAAAGCCAGAATATGCTGATAAAATTTTCTACCAGAAAACAAAAAAAGTTGAATT ACGTCGTGTTTTTCCTTCTTTAGATAAAGATGATTTAGTTATAGTTTATGTTTCATCTCCTAAAAAAGCTGTAGTTGGTT ACTTTAAAGTCAAAAAAATTATCAAAAAAAATATCTCTTACCTTTGGGATGAAGTCGAAGAAAAAGCAGGAATTACCCAG GAAGAATTTTACGATTATTATTCAGGATTAGATTTGGGGATTGGAATATTTTTCCAAAAAATTAAAACTTTTAGTAATCC AGTAGAATTAGAACAATTAAGACAAGAATTGAATACTTTTAGGCCACCTCAAAGCTATCGTTACTTGAAACCTAATGAAT TTGAAATTATTAAGAAATTAGTAGACTATGATTTTGAATAG
Upstream 100 bases:
>100_bases AAAAAACAGATAACTGTTCAAGGACCTTTTAAAATAACACCAGATCAATTTGCTAAAATATATGATCAAATCAACAAAAA TTAATTAGGATTATTCAAAT
Downstream 100 bases:
>100_bases TTCAAAAATAAGGCGTTTGTGAATCAAGCTATGAAACCATTATTTAGCCCAATTAAAAATTATTTTCAGTTAAGAGTTAG GCCATCGCAATTCTTGCACA
Product: hypothetical protein
Products: NA
Alternate protein names: Prophage Protein; Transcriptional Regulator; Transcriptional Regulator Cro/CI Family
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MPNTVLLSIKPEYADKIFYQKTKKVELRRVFPSLDKDDLVIVYVSSPKKAVVGYFKVKKIIKKNISYLWDEVEEKAGITQ EEFYDYYSGLDLGIGIFFQKIKTFSNPVELEQLRQELNTFRPPQSYRYLKPNEFEIIKKLVDYDFE
Sequences:
>Translated_146_residues MPNTVLLSIKPEYADKIFYQKTKKVELRRVFPSLDKDDLVIVYVSSPKKAVVGYFKVKKIIKKNISYLWDEVEEKAGITQ EEFYDYYSGLDLGIGIFFQKIKTFSNPVELEQLRQELNTFRPPQSYRYLKPNEFEIIKKLVDYDFE >Mature_145_residues PNTVLLSIKPEYADKIFYQKTKKVELRRVFPSLDKDDLVIVYVSSPKKAVVGYFKVKKIIKKNISYLWDEVEEKAGITQE EFYDYYSGLDLGIGIFFQKIKTFSNPVELEQLRQELNTFRPPQSYRYLKPNEFEIIKKLVDYDFE
Specific function: Unknown
COG id: COG4933
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17368; Mature: 17237
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTVLLSIKPEYADKIFYQKTKKVELRRVFPSLDKDDLVIVYVSSPKKAVVGYFKVKKI CCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHH IKKNISYLWDEVEEKAGITQEEFYDYYSGLDLGIGIFFQKIKTFSNPVELEQLRQELNTF HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC RPPQSYRYLKPNEFEIIKKLVDYDFE CCCCCCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure PNTVLLSIKPEYADKIFYQKTKKVELRRVFPSLDKDDLVIVYVSSPKKAVVGYFKVKKI CCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHH IKKNISYLWDEVEEKAGITQEEFYDYYSGLDLGIGIFFQKIKTFSNPVELEQLRQELNTF HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC RPPQSYRYLKPNEFEIIKKLVDYDFE CCCCCCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA