Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476981
Identifier: 113476981
GI number: 113476981
Start: 5357567
End: 5358226
Strand: Reverse
Name: 113476981
Synonym: Tery_3479
Alternate gene names: NA
Gene position: 5358226-5357567 (Counterclockwise)
Preceding gene: 113476982
Following gene: 113476980
Centisome position: 69.14
GC content: 26.82
Gene sequence:
>660_bases ATGTCAAAACAAAATGGAATTATATATCAACTTTTACAAGAAAGAGATATAGAGCAAGCAATTAACTGTTTAATTGATGT ATTTACTAGTGCAGAGCCGATTACAAAAGAACTTAAAATTTCTCCTAACGAGTTTTATCCTTTTGCTAAGATAATTTGCC AAAAAGCTGTAGAAGATAAATTATCTGTGATTGCTAAAGAACCGGTTAATTATCAAGTTGTAGGGTTTATTATTTCACAG GATTTATCAAATAACTTATCTGAAGAAATCTACAATAATATTTGTCAAAATCAAAAAATGGATACTCTTTTTCAATTTTT AAAAGAGCTAAATGAGCAATACGAAATACATAAAACAAACCTGATAAGCAAGGTATTTTATATTTTTTTATTAGGAGTTA GAGAAGAATATAAAAACAAAAATATTGGTAAGAAATTACTTGAACATAATCTCAAAATAGCAAGTGAAGAAAAATTTTCA TTGGTTAAAGTAGAAGCTACTGGCAATAAATCCCAGCACATTTTTAGAAACTATGGGTTTAAGGATAAGTGTTCAATAGA TTACCAGAACTATGAATATCAAGGAATCAAAATATTTGAGGGAATAAAAGAACATAAAAGTTGTATTTTAATGGAAAAAT TGCTTATACCACTTTCCTAA
Upstream 100 bases:
>100_bases AAACTACGATACTTAAGCATTAAGTAAAAATCAAAATTCCTATAATCTTATATCAAAGTTGTTTCAAGAGTTCAAAATTG TTTGAGGAGTTAATATAACT
Downstream 100 bases:
>100_bases AAAGAATCCACTAACGTAATGTGAAGTGCATTTCAATAAGGGTAGCTTAAAAATAGCTACTCCCATCAATTTTTAATTTG TCCGTTTTTTTTTGCGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MSKQNGIIYQLLQERDIEQAINCLIDVFTSAEPITKELKISPNEFYPFAKIICQKAVEDKLSVIAKEPVNYQVVGFIISQ DLSNNLSEEIYNNICQNQKMDTLFQFLKELNEQYEIHKTNLISKVFYIFLLGVREEYKNKNIGKKLLEHNLKIASEEKFS LVKVEATGNKSQHIFRNYGFKDKCSIDYQNYEYQGIKIFEGIKEHKSCILMEKLLIPLS
Sequences:
>Translated_219_residues MSKQNGIIYQLLQERDIEQAINCLIDVFTSAEPITKELKISPNEFYPFAKIICQKAVEDKLSVIAKEPVNYQVVGFIISQ DLSNNLSEEIYNNICQNQKMDTLFQFLKELNEQYEIHKTNLISKVFYIFLLGVREEYKNKNIGKKLLEHNLKIASEEKFS LVKVEATGNKSQHIFRNYGFKDKCSIDYQNYEYQGIKIFEGIKEHKSCILMEKLLIPLS >Mature_218_residues SKQNGIIYQLLQERDIEQAINCLIDVFTSAEPITKELKISPNEFYPFAKIICQKAVEDKLSVIAKEPVNYQVVGFIISQD LSNNLSEEIYNNICQNQKMDTLFQFLKELNEQYEIHKTNLISKVFYIFLLGVREEYKNKNIGKKLLEHNLKIASEEKFSL VKVEATGNKSQHIFRNYGFKDKCSIDYQNYEYQGIKIFEGIKEHKSCILMEKLLIPLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI23397447, Length=178, Percent_Identity=25.2808988764045, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25564; Mature: 25433
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKQNGIIYQLLQERDIEQAINCLIDVFTSAEPITKELKISPNEFYPFAKIICQKAVEDK CCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH LSVIAKEPVNYQVVGFIISQDLSNNLSEEIYNNICQNQKMDTLFQFLKELNEQYEIHKTN HHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LISKVFYIFLLGVREEYKNKNIGKKLLEHNLKIASEEKFSLVKVEATGNKSQHIFRNYGF HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHCCC KDKCSIDYQNYEYQGIKIFEGIKEHKSCILMEKLLIPLS CCCCEECCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SKQNGIIYQLLQERDIEQAINCLIDVFTSAEPITKELKISPNEFYPFAKIICQKAVEDK CCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH LSVIAKEPVNYQVVGFIISQDLSNNLSEEIYNNICQNQKMDTLFQFLKELNEQYEIHKTN HHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LISKVFYIFLLGVREEYKNKNIGKKLLEHNLKIASEEKFSLVKVEATGNKSQHIFRNYGF HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCHHHHHHHCCC KDKCSIDYQNYEYQGIKIFEGIKEHKSCILMEKLLIPLS CCCCEECCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA