Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476980
Identifier: 113476980
GI number: 113476980
Start: 5356961
End: 5357203
Strand: Reverse
Name: 113476980
Synonym: Tery_3478
Alternate gene names: NA
Gene position: 5357203-5356961 (Counterclockwise)
Preceding gene: 113476981
Following gene: 113476978
Centisome position: 69.12
GC content: 41.15
Gene sequence:
>243_bases GTGGGTTGGGGTGCCTATCGCTTACCTCTGGGTCAGTTTCTGATTTCAGACTGCCTATGGGGGAACTTGAAAGTCAAACA AAAATTAACTACTTACTTGGCTCTTAACCACAGCCGGATAGTAATAGAAAACCATTATCTATCAGTTGTGATAGCGAACT ATAACCCACCTCTAGAAGTAGCAGAGGTAGTTACTAATATGGGTTTTTATGAATTTAGAAGACAGAGGCGAGTACAAGTG TGA
Upstream 100 bases:
>100_bases GGGAAGCCCAAGGGTGAGTTGAGGTGATACTGGCGCAAAGCTACCCCTTCACTCAGGCTGCTGCACCAACTCTTGCTCCC CTCCCACCTAGGAAATAGAA
Downstream 100 bases:
>100_bases GCTACATGGTTCTGAGCTAATTATTTTTATTGATAGAAAAAAATTCTTAAACTTATTTAATCGTTTTTCTAAGGTTGAAG TCAATGCTCTTTGTCCTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 80; Mature: 79
Protein sequence:
>80_residues MGWGAYRLPLGQFLISDCLWGNLKVKQKLTTYLALNHSRIVIENHYLSVVIANYNPPLEVAEVVTNMGFYEFRRQRRVQV
Sequences:
>Translated_80_residues MGWGAYRLPLGQFLISDCLWGNLKVKQKLTTYLALNHSRIVIENHYLSVVIANYNPPLEVAEVVTNMGFYEFRRQRRVQV >Mature_79_residues GWGAYRLPLGQFLISDCLWGNLKVKQKLTTYLALNHSRIVIENHYLSVVIANYNPPLEVAEVVTNMGFYEFRRQRRVQV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9340; Mature: 9209
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGWGAYRLPLGQFLISDCLWGNLKVKQKLTTYLALNHSRIVIENHYLSVVIANYNPPLEV CCCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHEECCCEEEEECCEEEEEEECCCCCHHH AEVVTNMGFYEFRRQRRVQV HHHHHCCCHHHHHHHHCCCC >Mature Secondary Structure GWGAYRLPLGQFLISDCLWGNLKVKQKLTTYLALNHSRIVIENHYLSVVIANYNPPLEV CCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHEECCCEEEEECCEEEEEEECCCCCHHH AEVVTNMGFYEFRRQRRVQV HHHHHCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA