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The map label for this gene is yciM [C]

Identifier: 113476447

GI number: 113476447

Start: 4462676

End: 4464022

Strand: Reverse

Name: yciM [C]

Synonym: Tery_2862

Alternate gene names: 113476447

Gene position: 4464022-4462676 (Counterclockwise)

Preceding gene: 113476448

Following gene: 113476446

Centisome position: 57.6

GC content: 31.25

Gene sequence:

>1347_bases
ATGTATTCAGCTTTAACTCCAGAAATGTCGGCTTTTAGTTTATGTCAAGAAGCAGAGTCTCATTTAAAAGCAGAAAAATT
AGATGAGGCTTTTTTGGCTTGTGAAAAAGCTCTAGAAATATTACCATTCTATGCTTTAGCTTGCAAAAGTATGGGAAATG
TATTGCAGGCTATGGGAAAGTTAGATGAAGCAATAAATTACTATGTACAAGCAATTATGCAACAACCAAATTGGGCGGAA
GTTTATACAAATATTGGTAGTTTATATGCTAAACAAAAAGAGTGGGAACCAGCTATCGCTTGTTATAGAACAGCTATTGA
ATTACAACCAAATTTTACTGGTACTTATCGTAATTTATCTCGGCTTTATCAACAGTTAGGAGATTTGGGTTTAGCCAAAA
AATATTGGTATTACGGAAAAAAAATAGAATCAGAAAAAAAAGCATTAGAAAAGCTAAATAAGGGGGATGTTTTATTTAGT
AAAGGAAAAATAAAAGAGGCGATCGCTGATTATTTTGAGGCTATAGAATTAAATCCTACTTTATCGGATGCTTACTCGAA
ATTAGCAGAAATTTTAGTAAATCAGGGAGAATTAGATGCAGCAATAGATTGTTATCAAAGTTTAAGTAAACTATTACCTG
AAAATTGGTTAATTCTTCATAAACTAGGAAAAATTTTCCGAGAAACAGGTAAGTTAAATGATGCAGTAGAAGTATTTAAA
CGTGCTATAGAAATTAATCCAAAGTTTCCTTGGTCTTACAAAAATTTAGCAGATATTTTGTATGAACAAGGTAAGTTAAA
TCAAGCCCTTACTTGTTATCGTAAACTGATTAAAAATGATCCTAATATTTGGGATGCTTACTGTAAAATTGGAGAAATAT
TGGTCAAACAAGGAAAAATAAATCAAGCAGTTGTTGTCTACCGTAAAGGTATCAAACTTAACCCACATTTAGCTAAGTTT
CACTATCTATTAGGGGAAGCACTGGGTAAACAAAAAAAATGGGGGTCAGCAATTAAAGTTTATAGTAAAGCGATAGAGTT
AAAAGCAAATAATCATTTATTTCATCGTAGTTTAGCAAATGCTTTGCAGGAGCTTGGGAAATTAGATGAGGCTATTATTA
GTTATCGAAAAGCTATAGAAATTAATTCTAATTCTTGTTGGTTATACGCATCATTAGGAAAAGTATATATTCAACAAAAA
AATTGGTCTGATGCTATCGAATGTTTTAGAGAAGCAATACAAATTAAACCAGACTATGATAAAGCTTACGAAAAAATAGC
CTATATCTTTGAGCAGCTAGGTGACAGTGAAGCTGCAGAAAAATGGAGAAATAAAGATAATTTATAA

Upstream 100 bases:

>100_bases
GGATTTTAAGTTTTCTGGTGAAGTCGAACCTAATAAGAACTAATAATTTAAGTATTCTCTATTCTATTTTTACTTTTTCA
TTTTTCCTGATCAAAAAAAT

Downstream 100 bases:

>100_bases
TCTTAAATAAAAAGGTAATTTTAGTTATTAATATCTCTGGCTAAAGCTACAGGCTTGAAATACCCATGGCAAATATTTTT
TTCCCTAACTTTGAAAGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MYSALTPEMSAFSLCQEAESHLKAEKLDEAFLACEKALEILPFYALACKSMGNVLQAMGKLDEAINYYVQAIMQQPNWAE
VYTNIGSLYAKQKEWEPAIACYRTAIELQPNFTGTYRNLSRLYQQLGDLGLAKKYWYYGKKIESEKKALEKLNKGDVLFS
KGKIKEAIADYFEAIELNPTLSDAYSKLAEILVNQGELDAAIDCYQSLSKLLPENWLILHKLGKIFRETGKLNDAVEVFK
RAIEINPKFPWSYKNLADILYEQGKLNQALTCYRKLIKNDPNIWDAYCKIGEILVKQGKINQAVVVYRKGIKLNPHLAKF
HYLLGEALGKQKKWGSAIKVYSKAIELKANNHLFHRSLANALQELGKLDEAIISYRKAIEINSNSCWLYASLGKVYIQQK
NWSDAIECFREAIQIKPDYDKAYEKIAYIFEQLGDSEAAEKWRNKDNL

Sequences:

>Translated_448_residues
MYSALTPEMSAFSLCQEAESHLKAEKLDEAFLACEKALEILPFYALACKSMGNVLQAMGKLDEAINYYVQAIMQQPNWAE
VYTNIGSLYAKQKEWEPAIACYRTAIELQPNFTGTYRNLSRLYQQLGDLGLAKKYWYYGKKIESEKKALEKLNKGDVLFS
KGKIKEAIADYFEAIELNPTLSDAYSKLAEILVNQGELDAAIDCYQSLSKLLPENWLILHKLGKIFRETGKLNDAVEVFK
RAIEINPKFPWSYKNLADILYEQGKLNQALTCYRKLIKNDPNIWDAYCKIGEILVKQGKINQAVVVYRKGIKLNPHLAKF
HYLLGEALGKQKKWGSAIKVYSKAIELKANNHLFHRSLANALQELGKLDEAIISYRKAIEINSNSCWLYASLGKVYIQQK
NWSDAIECFREAIQIKPDYDKAYEKIAYIFEQLGDSEAAEKWRNKDNL
>Mature_448_residues
MYSALTPEMSAFSLCQEAESHLKAEKLDEAFLACEKALEILPFYALACKSMGNVLQAMGKLDEAINYYVQAIMQQPNWAE
VYTNIGSLYAKQKEWEPAIACYRTAIELQPNFTGTYRNLSRLYQQLGDLGLAKKYWYYGKKIESEKKALEKLNKGDVLFS
KGKIKEAIADYFEAIELNPTLSDAYSKLAEILVNQGELDAAIDCYQSLSKLLPENWLILHKLGKIFRETGKLNDAVEVFK
RAIEINPKFPWSYKNLADILYEQGKLNQALTCYRKLIKNDPNIWDAYCKIGEILVKQGKINQAVVVYRKGIKLNPHLAKF
HYLLGEALGKQKKWGSAIKVYSKAIELKANNHLFHRSLANALQELGKLDEAIISYRKAIEINSNSCWLYASLGKVYIQQK
NWSDAIECFREAIQIKPDYDKAYEKIAYIFEQLGDSEAAEKWRNKDNL

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 9 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307150, Length=416, Percent_Identity=29.3269230769231, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI32307148, Length=416, Percent_Identity=29.3269230769231, Blast_Score=192, Evalue=6e-49,
Organism=Homo sapiens, GI83415184, Length=274, Percent_Identity=25.1824817518248, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI301336134, Length=274, Percent_Identity=25.1824817518248, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI167466177, Length=220, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI167466175, Length=220, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI118766328, Length=248, Percent_Identity=24.5967741935484, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI224809432, Length=263, Percent_Identity=23.574144486692, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI118766330, Length=248, Percent_Identity=24.5967741935484, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115532690, Length=383, Percent_Identity=29.7650130548303, Blast_Score=174, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI115532692, Length=379, Percent_Identity=29.8153034300792, Blast_Score=171, Evalue=5e-43,
Organism=Saccharomyces cerevisiae, GI6319589, Length=347, Percent_Identity=25.6484149855908, Blast_Score=77, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6319387, Length=199, Percent_Identity=27.1356783919598, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321909, Length=216, Percent_Identity=25.9259259259259, Blast_Score=63, Evalue=8e-11,
Organism=Drosophila melanogaster, GI17647755, Length=416, Percent_Identity=29.3269230769231, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI24585827, Length=416, Percent_Identity=29.3269230769231, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI24585829, Length=416, Percent_Identity=29.3269230769231, Blast_Score=189, Evalue=2e-48,
Organism=Drosophila melanogaster, GI24581187, Length=342, Percent_Identity=26.6081871345029, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281364285, Length=342, Percent_Identity=26.6081871345029, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI19920486, Length=368, Percent_Identity=23.9130434782609, Blast_Score=93, Evalue=5e-19,
Organism=Drosophila melanogaster, GI161076610, Length=368, Percent_Identity=23.9130434782609, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24647123, Length=246, Percent_Identity=26.8292682926829, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24659892, Length=234, Percent_Identity=26.4957264957265, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24656717, Length=368, Percent_Identity=22.554347826087, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18110006, Length=368, Percent_Identity=22.554347826087, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 51294; Mature: 51294

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSALTPEMSAFSLCQEAESHLKAEKLDEAFLACEKALEILPFYALACKSMGNVLQAMGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDEAINYYVQAIMQQPNWAEVYTNIGSLYAKQKEWEPAIACYRTAIELQPNFTGTYRNLS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCHHHHHHH
RLYQQLGDLGLAKKYWYYGKKIESEKKALEKLNKGDVLFSKGKIKEAIADYFEAIELNPT
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCC
LSDAYSKLAEILVNQGELDAAIDCYQSLSKLLPENWLILHKLGKIFRETGKLNDAVEVFK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
RAIEINPKFPWSYKNLADILYEQGKLNQALTCYRKLIKNDPNIWDAYCKIGEILVKQGKI
HHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
NQAVVVYRKGIKLNPHLAKFHYLLGEALGKQKKWGSAIKVYSKAIELKANNHLFHRSLAN
CCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALQELGKLDEAIISYRKAIEINSNSCWLYASLGKVYIQQKNWSDAIECFREAIQIKPDYD
HHHHHHHHHHHHHHHHHHEEECCCCEEEEEEHHHHHEECCCCHHHHHHHHHHHCCCCCHH
KAYEKIAYIFEQLGDSEAAEKWRNKDNL
HHHHHHHHHHHHHCCHHHHHHHCCCCCC
>Mature Secondary Structure
MYSALTPEMSAFSLCQEAESHLKAEKLDEAFLACEKALEILPFYALACKSMGNVLQAMGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LDEAINYYVQAIMQQPNWAEVYTNIGSLYAKQKEWEPAIACYRTAIELQPNFTGTYRNLS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEECCCCCHHHHHHH
RLYQQLGDLGLAKKYWYYGKKIESEKKALEKLNKGDVLFSKGKIKEAIADYFEAIELNPT
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCC
LSDAYSKLAEILVNQGELDAAIDCYQSLSKLLPENWLILHKLGKIFRETGKLNDAVEVFK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
RAIEINPKFPWSYKNLADILYEQGKLNQALTCYRKLIKNDPNIWDAYCKIGEILVKQGKI
HHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
NQAVVVYRKGIKLNPHLAKFHYLLGEALGKQKKWGSAIKVYSKAIELKANNHLFHRSLAN
CCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALQELGKLDEAIISYRKAIEINSNSCWLYASLGKVYIQQKNWSDAIECFREAIQIKPDYD
HHHHHHHHHHHHHHHHHHEEECCCCEEEEEEHHHHHEECCCCHHHHHHHHHHHCCCCCHH
KAYEKIAYIFEQLGDSEAAEKWRNKDNL
HHHHHHHHHHHHHCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087; 9697413 [H]