| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113476343
Identifier: 113476343
GI number: 113476343
Start: 4256448
End: 4256819
Strand: Reverse
Name: 113476343
Synonym: Tery_2748
Alternate gene names: NA
Gene position: 4256819-4256448 (Counterclockwise)
Preceding gene: 113476349
Following gene: 113476342
Centisome position: 54.93
GC content: 31.72
Gene sequence:
>372_bases ATGTCAATTAATCAATTAAAGCCAGCAGACAAAGGGGAAATAGCCGTTTATAGTCCATATTACCCAGAAAAAAGACGTAA ATATTTAGGTCATGCTATTAGCTTGTATAAACAAAAAAGTTTAGAAGGAGCAAGAAGTATTGAAGGGAACGAAAATATTC CTTTTATTATTACCTGGAATGTTTCTATATTACCTGCAGATATAACTCGTTTTCGAATGCAGTTTAATGGTAATCAAGAA CTCAGTTATGAATTAACAATGGCCAATTACGAATTTATTGATTTTTTAATAGATGTTTTACTGAATTACAATCGTACTCG TACAATAGATTTTTCTCAGAGTTTCTACGGCAAGCTACTCCGCTATGAGTAA
Upstream 100 bases:
>100_bases GTGTAAGTATATTGTAAATATACTTGCTAAGTCGTGTAGTTGATCAATAAAAAAATAACTAAAGTTTAATTATAGTATTA ATTATATAGAGTATATTTAG
Downstream 100 bases:
>100_bases TTTAGGTTTAATGATCATTTTCAGCAAAGAATAGTGAAAAGAGTGCATTTAAACTATTACCTTTTAAAGAGGATTTTGAA TTACCCAAGAATAACGGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MSINQLKPADKGEIAVYSPYYPEKRRKYLGHAISLYKQKSLEGARSIEGNENIPFIITWNVSILPADITRFRMQFNGNQE LSYELTMANYEFIDFLIDVLLNYNRTRTIDFSQSFYGKLLRYE
Sequences:
>Translated_123_residues MSINQLKPADKGEIAVYSPYYPEKRRKYLGHAISLYKQKSLEGARSIEGNENIPFIITWNVSILPADITRFRMQFNGNQE LSYELTMANYEFIDFLIDVLLNYNRTRTIDFSQSFYGKLLRYE >Mature_122_residues SINQLKPADKGEIAVYSPYYPEKRRKYLGHAISLYKQKSLEGARSIEGNENIPFIITWNVSILPADITRFRMQFNGNQEL SYELTMANYEFIDFLIDVLLNYNRTRTIDFSQSFYGKLLRYE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14506; Mature: 14375
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSINQLKPADKGEIAVYSPYYPEKRRKYLGHAISLYKQKSLEGARSIEGNENIPFIITWN CCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC VSILPADITRFRMQFNGNQELSYELTMANYEFIDFLIDVLLNYNRTRTIDFSQSFYGKLL CEEECCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH RYE CCC >Mature Secondary Structure SINQLKPADKGEIAVYSPYYPEKRRKYLGHAISLYKQKSLEGARSIEGNENIPFIITWN CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC VSILPADITRFRMQFNGNQELSYELTMANYEFIDFLIDVLLNYNRTRTIDFSQSFYGKLL CEEECCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH RYE CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA