| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476342
Identifier: 113476342
GI number: 113476342
Start: 4252779
End: 4253852
Strand: Reverse
Name: 113476342
Synonym: Tery_2747
Alternate gene names: NA
Gene position: 4253852-4252779 (Counterclockwise)
Preceding gene: 113476343
Following gene: 113476341
Centisome position: 54.89
GC content: 37.06
Gene sequence:
>1074_bases GTGCCAAAATCTGCAAATTATTTGCTAATTGGATCGACTGAAGCCTACAGTGGCAAGTCTACAATTGCTATAGGATTAGC TCATAAGTTACAAGAACAAGGTATAGCCATTGGTTATGGAAAACTCTTGGGAAACTGTTTAGCCACAAGATCCATTTCTA CAGATGCTGATGTTCAGTTTGTAACTGACACTCTCAAACTTTCAGACAATAGTATTCAACCAACTTTGTTGATGCTGAAT GAAAGTATTATAAATAAGCGGTTGCTGGCAGAAGAAAAAACTGATTATCAAAAATCTCTAACACAATATCTACAGGTAAA GGGAGAAAATTTGGTAATATTAGAAGGACCTAGCAACCTAGATGAGGGTAGTTTGTTTGAATTATCACTGCCACAAGTTT CTGAAATTCTTAATTCTGCTGTAATTCTGGTAACTCGTCCAAACTCACATTCTTATATAGACTCTTTACTTTCCGCCAAA CAACGTTTAGGTAATTCCCTTATAGGTGTAATTATTAATGATGTGCCACTCCCAGCGCAAGAAACAGTGACGACTTTAGT AAAACCTTTTCTGGAAGCTAGAAATATACCTGTATTAGGAATATTGCCCAGAAGTAATCTATTACGCAGTGTTACAGTTG AAGAATTAGTGAAGCAGTTAAAAGCTCATGTGCTTTGTCGTTCTGACCGCCTAGATTTAATGGTAGAGAGCTTGACAATT GGTGCAATGAATGTTAGTTCAGCTATCAAATATTTTCGTAAGGCTACAAATATGGCTGTAGTTACAGGAGGCGATCGCAC AGACATTCAGTTAGCAGCTTTAGAAACTTCGACCCATTGTCTAATTTTAACTGGACAACTTTCACCAGATGAGTTAGTAT TAAGTCGTGCTGATGATGCCGAAGTCCCTGTATTATCAGTAGAGTATGAAACCCTTTCTACAGTAGAAATAATTAATAGA GCTTTCGGAAGTGTTCGTTTACACGAACCTGTTAAAGTAGAATTCGTCAAAAAACTAATCGCACAACACTTTGATTTTGA ACGCTTGCTCAGTCATTTTCAGTTGGGAGTATAG
Upstream 100 bases:
>100_bases GACGTTTTATATAAGTTTTATAAAGCAGAATATCAAACAGTCATCCTTGCCCTAAAAATGCAATAATTATTAAAAGTATA TTTATGGCAGGAGTGAGGAT
Downstream 100 bases:
>100_bases CTAGTGTTTATTTGCAAAAACTAGTAATCTTATATTTTGGGAGTGTAATTAAGGGCTCTAAAATCTTGTTTATTGGCTCA ATAAGTATATTCACTTATTC
Product: DRTGG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 357; Mature: 356
Protein sequence:
>357_residues MPKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQFVTDTLKLSDNSIQPTLLMLN ESIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNLDEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAK QRLGNSLIGVIINDVPLPAQETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTI GAMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDAEVPVLSVEYETLSTVEIINR AFGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV
Sequences:
>Translated_357_residues MPKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQFVTDTLKLSDNSIQPTLLMLN ESIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNLDEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAK QRLGNSLIGVIINDVPLPAQETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTI GAMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDAEVPVLSVEYETLSTVEIINR AFGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV >Mature_356_residues PKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQFVTDTLKLSDNSIQPTLLMLNE SIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNLDEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAKQ RLGNSLIGVIINDVPLPAQETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTIG AMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDAEVPVLSVEYETLSTVEIINRA FGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV
Specific function: Unknown
COG id: COG0857
COG function: function code R; BioD-like N-terminal domain of phosphotransacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To A.fulgidus AF1212 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002586 - InterPro: IPR010766 [H]
Pfam domain/function: PF01656 CbiA; PF07085 DRTGG [H]
EC number: NA
Molecular weight: Translated: 39119; Mature: 38988
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQF CCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCCCCEEE VTDTLKLSDNSIQPTLLMLNESIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNL EEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC DEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAKQRLGNSLIGVIINDVPLPAQ CCCCEEEECCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH ETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTI HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEHHHEE GAMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDA CEECHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCHHHHEEECCCCC EVPVLSVEYETLSTVEIINRAFGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV CCCEEEEEHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCC >Mature Secondary Structure PKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQF CCCCCEEEEECCCCCCCCCEEEEHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCCCCEEE VTDTLKLSDNSIQPTLLMLNESIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNL EEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC DEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAKQRLGNSLIGVIINDVPLPAQ CCCCEEEECCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH ETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTI HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEHHHEE GAMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDA CEECHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCHHHHEEECCCCC EVPVLSVEYETLSTVEIINRAFGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV CCCEEEEEHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]