Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113476342

Identifier: 113476342

GI number: 113476342

Start: 4252779

End: 4253852

Strand: Reverse

Name: 113476342

Synonym: Tery_2747

Alternate gene names: NA

Gene position: 4253852-4252779 (Counterclockwise)

Preceding gene: 113476343

Following gene: 113476341

Centisome position: 54.89

GC content: 37.06

Gene sequence:

>1074_bases
GTGCCAAAATCTGCAAATTATTTGCTAATTGGATCGACTGAAGCCTACAGTGGCAAGTCTACAATTGCTATAGGATTAGC
TCATAAGTTACAAGAACAAGGTATAGCCATTGGTTATGGAAAACTCTTGGGAAACTGTTTAGCCACAAGATCCATTTCTA
CAGATGCTGATGTTCAGTTTGTAACTGACACTCTCAAACTTTCAGACAATAGTATTCAACCAACTTTGTTGATGCTGAAT
GAAAGTATTATAAATAAGCGGTTGCTGGCAGAAGAAAAAACTGATTATCAAAAATCTCTAACACAATATCTACAGGTAAA
GGGAGAAAATTTGGTAATATTAGAAGGACCTAGCAACCTAGATGAGGGTAGTTTGTTTGAATTATCACTGCCACAAGTTT
CTGAAATTCTTAATTCTGCTGTAATTCTGGTAACTCGTCCAAACTCACATTCTTATATAGACTCTTTACTTTCCGCCAAA
CAACGTTTAGGTAATTCCCTTATAGGTGTAATTATTAATGATGTGCCACTCCCAGCGCAAGAAACAGTGACGACTTTAGT
AAAACCTTTTCTGGAAGCTAGAAATATACCTGTATTAGGAATATTGCCCAGAAGTAATCTATTACGCAGTGTTACAGTTG
AAGAATTAGTGAAGCAGTTAAAAGCTCATGTGCTTTGTCGTTCTGACCGCCTAGATTTAATGGTAGAGAGCTTGACAATT
GGTGCAATGAATGTTAGTTCAGCTATCAAATATTTTCGTAAGGCTACAAATATGGCTGTAGTTACAGGAGGCGATCGCAC
AGACATTCAGTTAGCAGCTTTAGAAACTTCGACCCATTGTCTAATTTTAACTGGACAACTTTCACCAGATGAGTTAGTAT
TAAGTCGTGCTGATGATGCCGAAGTCCCTGTATTATCAGTAGAGTATGAAACCCTTTCTACAGTAGAAATAATTAATAGA
GCTTTCGGAAGTGTTCGTTTACACGAACCTGTTAAAGTAGAATTCGTCAAAAAACTAATCGCACAACACTTTGATTTTGA
ACGCTTGCTCAGTCATTTTCAGTTGGGAGTATAG

Upstream 100 bases:

>100_bases
GACGTTTTATATAAGTTTTATAAAGCAGAATATCAAACAGTCATCCTTGCCCTAAAAATGCAATAATTATTAAAAGTATA
TTTATGGCAGGAGTGAGGAT

Downstream 100 bases:

>100_bases
CTAGTGTTTATTTGCAAAAACTAGTAATCTTATATTTTGGGAGTGTAATTAAGGGCTCTAAAATCTTGTTTATTGGCTCA
ATAAGTATATTCACTTATTC

Product: DRTGG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MPKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQFVTDTLKLSDNSIQPTLLMLN
ESIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNLDEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAK
QRLGNSLIGVIINDVPLPAQETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTI
GAMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDAEVPVLSVEYETLSTVEIINR
AFGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV

Sequences:

>Translated_357_residues
MPKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQFVTDTLKLSDNSIQPTLLMLN
ESIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNLDEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAK
QRLGNSLIGVIINDVPLPAQETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTI
GAMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDAEVPVLSVEYETLSTVEIINR
AFGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV
>Mature_356_residues
PKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQFVTDTLKLSDNSIQPTLLMLNE
SIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNLDEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAKQ
RLGNSLIGVIINDVPLPAQETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTIG
AMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDAEVPVLSVEYETLSTVEIINRA
FGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV

Specific function: Unknown

COG id: COG0857

COG function: function code R; BioD-like N-terminal domain of phosphotransacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.fulgidus AF1212 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR010766 [H]

Pfam domain/function: PF01656 CbiA; PF07085 DRTGG [H]

EC number: NA

Molecular weight: Translated: 39119; Mature: 38988

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQF
CCCCCCEEEEECCCCCCCCCEEEEHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCCCCEEE
VTDTLKLSDNSIQPTLLMLNESIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNL
EEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
DEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAKQRLGNSLIGVIINDVPLPAQ
CCCCEEEECCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH
ETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTI
HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEHHHEE
GAMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDA
CEECHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCHHHHEEECCCCC
EVPVLSVEYETLSTVEIINRAFGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV
CCCEEEEEHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure 
PKSANYLLIGSTEAYSGKSTIAIGLAHKLQEQGIAIGYGKLLGNCLATRSISTDADVQF
CCCCCEEEEECCCCCCCCCEEEEHHHHHHHHCCEEEEHHHHHHHHHHHCCCCCCCCEEE
VTDTLKLSDNSIQPTLLMLNESIINKRLLAEEKTDYQKSLTQYLQVKGENLVILEGPSNL
EEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
DEGSLFELSLPQVSEILNSAVILVTRPNSHSYIDSLLSAKQRLGNSLIGVIINDVPLPAQ
CCCCEEEECCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH
ETVTTLVKPFLEARNIPVLGILPRSNLLRSVTVEELVKQLKAHVLCRSDRLDLMVESLTI
HHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEHHHEE
GAMNVSSAIKYFRKATNMAVVTGGDRTDIQLAALETSTHCLILTGQLSPDELVLSRADDA
CEECHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCCEEEEEECCCCHHHHEEECCCCC
EVPVLSVEYETLSTVEIINRAFGSVRLHEPVKVEFVKKLIAQHFDFERLLSHFQLGV
CCCEEEEEHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]