| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is mviN [H]
Identifier: 113476320
GI number: 113476320
Start: 4218705
End: 4220324
Strand: Reverse
Name: mviN [H]
Synonym: Tery_2723
Alternate gene names: 113476320
Gene position: 4220324-4218705 (Counterclockwise)
Preceding gene: 113476325
Following gene: 113476318
Centisome position: 54.46
GC content: 37.41
Gene sequence:
>1620_bases GTGTCTGAATCAAAATCACAAAAAAACTCTCGTTCCCTAACAAAAATAGCTGGCATTGTAGCAGTAGCCACATTAATCAG TAAAATATTTGGCCTCATACGTCAACAGGCCATCGCCGCAGCCTTCGGAGTCGGTGCAGCAGTAGACGCCTATAATTACG CTTACGTCATCCCCGGCTTTTTATTGGTCTTACTAGGAGGAATTAACGGACCCTTTCATAGTGCCATAGTAAGTGTCTTA GCAAAGCGCGATAAGTCAGAAGCAGCACCACTAATAGAAACCATCACAACCTTAGTCAGTGGAGTCTTATTGTTAGTCAC AGTTAGTCTGATTTTTTTTGCCGATCCTTTAATTGACCTAGTAGCACCAGGTTTAAGCCAAACAACAACAGGTCTAAAAA TTCGAGCGATCGCCATCCAACAATTCCAAATTATGGCCCCAATGGCTTTACTAGCAGGACTAATAGGCATTGGTTTTGGC GCCCTTAATGCTGCAGATATATATTGGCTACCTTCTATTAGCCCATTGTTTTCTAGCATAGCTCTCATTGGAGGAATTTT TATACTAGTCTTCCAGCTAGGAGAAAACATTACTCAACCAGAACATGCCATGATAGGAGGCATAATTTTAGCTTGGAGTA CCCTCATCGGAGCAATATTACAATGGTTAATTCAAGTTCCCTCATTGTGGCGAGCAGGTTTAGGAAAATTACGTTTCAGA TTTAATTTTCGCAACCCAGGAGTACAAGAAATTACCAAAGTAATGATACCTGCAACTTTGTCTTCTGGAATGTTACATAT TAATGTTTATACAGACTTATTTTTTGCTTCTTATATTCCCCAAGCTGCCGCTTCCTTAGGTTATTCTGGTTTATTAGTAC AGACACCTTTGGGAATTATTTCTAATGTAATTTTAGTTCCATTTTTACCAATATTTTCTCGATTAGCTGCACCAGAAAAT TGGCAAGATTTAAAATATCGAATTCGGCAAGCTTTAGTATTAACAGGAATTACAATGTTGCCTTTAAGTGCAATTATGGT GACCTTAGCTTTGCCTATTGTCAGGGTAGTTTATGAACGTTATGCTTTTGATTTATCCGCTTCAAAATTTGTCGCTTCTG TATTAATAGCTTATGCAGTAGGAATGTTTGTTTATTTAGGAAGGGATGTTTTAGTCAGAGTTTTTTATGCTTTGGGAGAT GGAGAAACTCCTTTTAAAGTTAGTGTATTTAATATTTTTCTGAATGCCCTCTTAGATTATTTGTTGATCAATACTTTTGG TGCTCCTGGTTTAGTATTAGCAACGGTGGGGGTAAATTTAATTTCAATGGTAATTTTTCTCTGGTTATTAGATCAAAAAT TAGGGGGTTTACCTTGGGGAGAATGGTTGATACCTTTTGCTGGTTTAATTCTTGGAACTTTGGCGGCAAGTTTTGTTTGT TGGAGTGTGCTTTATGGGTGTCAGTTAGTGTTGGGAAGTGAGGGATTTTTTGTGCAGTTATTAGAACTTGGTTTAGCAAG TTTTTCGGCGTTAGGTATCTTTGGTTTGATAGTAATGAAAATGAATTTGCCAGAGGTTGATATTTTTATTAGTCGAATTA GACAAAAATTGAGAATTTGA
Upstream 100 bases:
>100_bases AAAAAACTTATCTACAGTTTCCTATGACTTAATACTGAAATCTTAACTAAACTTACTTGAAAATACATCACTATTTTTAG CTATATCTGGAATCATAATT
Downstream 100 bases:
>100_bases CATCCCCTTTAGTTTAAGGTTACGTTCCATCCGCAATAGTCAGAAATTTCCGAACCAACCCCAAAATTAGAGTGCTTAAA AAAATGAATTTACTGTTGCT
Product: integral membrane protein MviN
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 539; Mature: 538
Protein sequence:
>539_residues MSESKSQKNSRSLTKIAGIVAVATLISKIFGLIRQQAIAAAFGVGAAVDAYNYAYVIPGFLLVLLGGINGPFHSAIVSVL AKRDKSEAAPLIETITTLVSGVLLLVTVSLIFFADPLIDLVAPGLSQTTTGLKIRAIAIQQFQIMAPMALLAGLIGIGFG ALNAADIYWLPSISPLFSSIALIGGIFILVFQLGENITQPEHAMIGGIILAWSTLIGAILQWLIQVPSLWRAGLGKLRFR FNFRNPGVQEITKVMIPATLSSGMLHINVYTDLFFASYIPQAAASLGYSGLLVQTPLGIISNVILVPFLPIFSRLAAPEN WQDLKYRIRQALVLTGITMLPLSAIMVTLALPIVRVVYERYAFDLSASKFVASVLIAYAVGMFVYLGRDVLVRVFYALGD GETPFKVSVFNIFLNALLDYLLINTFGAPGLVLATVGVNLISMVIFLWLLDQKLGGLPWGEWLIPFAGLILGTLAASFVC WSVLYGCQLVLGSEGFFVQLLELGLASFSALGIFGLIVMKMNLPEVDIFISRIRQKLRI
Sequences:
>Translated_539_residues MSESKSQKNSRSLTKIAGIVAVATLISKIFGLIRQQAIAAAFGVGAAVDAYNYAYVIPGFLLVLLGGINGPFHSAIVSVL AKRDKSEAAPLIETITTLVSGVLLLVTVSLIFFADPLIDLVAPGLSQTTTGLKIRAIAIQQFQIMAPMALLAGLIGIGFG ALNAADIYWLPSISPLFSSIALIGGIFILVFQLGENITQPEHAMIGGIILAWSTLIGAILQWLIQVPSLWRAGLGKLRFR FNFRNPGVQEITKVMIPATLSSGMLHINVYTDLFFASYIPQAAASLGYSGLLVQTPLGIISNVILVPFLPIFSRLAAPEN WQDLKYRIRQALVLTGITMLPLSAIMVTLALPIVRVVYERYAFDLSASKFVASVLIAYAVGMFVYLGRDVLVRVFYALGD GETPFKVSVFNIFLNALLDYLLINTFGAPGLVLATVGVNLISMVIFLWLLDQKLGGLPWGEWLIPFAGLILGTLAASFVC WSVLYGCQLVLGSEGFFVQLLELGLASFSALGIFGLIVMKMNLPEVDIFISRIRQKLRI >Mature_538_residues SESKSQKNSRSLTKIAGIVAVATLISKIFGLIRQQAIAAAFGVGAAVDAYNYAYVIPGFLLVLLGGINGPFHSAIVSVLA KRDKSEAAPLIETITTLVSGVLLLVTVSLIFFADPLIDLVAPGLSQTTTGLKIRAIAIQQFQIMAPMALLAGLIGIGFGA LNAADIYWLPSISPLFSSIALIGGIFILVFQLGENITQPEHAMIGGIILAWSTLIGAILQWLIQVPSLWRAGLGKLRFRF NFRNPGVQEITKVMIPATLSSGMLHINVYTDLFFASYIPQAAASLGYSGLLVQTPLGIISNVILVPFLPIFSRLAAPENW QDLKYRIRQALVLTGITMLPLSAIMVTLALPIVRVVYERYAFDLSASKFVASVLIAYAVGMFVYLGRDVLVRVFYALGDG ETPFKVSVFNIFLNALLDYLLINTFGAPGLVLATVGVNLISMVIFLWLLDQKLGGLPWGEWLIPFAGLILGTLAASFVCW SVLYGCQLVLGSEGFFVQLLELGLASFSALGIFGLIVMKMNLPEVDIFISRIRQKLRI
Specific function: Unknown
COG id: COG0728
COG function: function code R; Uncharacterized membrane protein, putative virulence factor
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mviN family [H]
Homologues:
Organism=Escherichia coli, GI1787309, Length=459, Percent_Identity=26.1437908496732, Blast_Score=122, Evalue=4e-29,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004268 [H]
Pfam domain/function: PF03023 MVIN [H]
EC number: NA
Molecular weight: Translated: 58234; Mature: 58103
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSESKSQKNSRSLTKIAGIVAVATLISKIFGLIRQQAIAAAFGVGAAVDAYNYAYVIPGF CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LLVLLGGINGPFHSAIVSVLAKRDKSEAAPLIETITTLVSGVLLLVTVSLIFFADPLIDL HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAPGLSQTTTGLKIRAIAIQQFQIMAPMALLAGLIGIGFGALNAADIYWLPSISPLFSSI HCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHH ALIGGIFILVFQLGENITQPEHAMIGGIILAWSTLIGAILQWLIQVPSLWRAGLGKLRFR HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEE FNFRNPGVQEITKVMIPATLSSGMLHINVYTDLFFASYIPQAAASLGYSGLLVQTPLGII EECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHH SNVILVPFLPIFSRLAAPENWQDLKYRIRQALVLTGITMLPLSAIMVTLALPIVRVVYER HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAFDLSASKFVASVLIAYAVGMFVYLGRDVLVRVFYALGDGETPFKVSVFNIFLNALLDY HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LLINTFGAPGLVLATVGVNLISMVIFLWLLDQKLGGLPWGEWLIPFAGLILGTLAASFVC HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH WSVLYGCQLVLGSEGFFVQLLELGLASFSALGIFGLIVMKMNLPEVDIFISRIRQKLRI HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure SESKSQKNSRSLTKIAGIVAVATLISKIFGLIRQQAIAAAFGVGAAVDAYNYAYVIPGF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH LLVLLGGINGPFHSAIVSVLAKRDKSEAAPLIETITTLVSGVLLLVTVSLIFFADPLIDL HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAPGLSQTTTGLKIRAIAIQQFQIMAPMALLAGLIGIGFGALNAADIYWLPSISPLFSSI HCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHH ALIGGIFILVFQLGENITQPEHAMIGGIILAWSTLIGAILQWLIQVPSLWRAGLGKLRFR HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEE FNFRNPGVQEITKVMIPATLSSGMLHINVYTDLFFASYIPQAAASLGYSGLLVQTPLGII EECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHH SNVILVPFLPIFSRLAAPENWQDLKYRIRQALVLTGITMLPLSAIMVTLALPIVRVVYER HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAFDLSASKFVASVLIAYAVGMFVYLGRDVLVRVFYALGDGETPFKVSVFNIFLNALLDY HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LLINTFGAPGLVLATVGVNLISMVIFLWLLDQKLGGLPWGEWLIPFAGLILGTLAASFVC HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH WSVLYGCQLVLGSEGFFVQLLELGLASFSALGIFGLIVMKMNLPEVDIFISRIRQKLRI HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]