Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113476318

Identifier: 113476318

GI number: 113476318

Start: 4213178

End: 4214185

Strand: Reverse

Name: 113476318

Synonym: Tery_2720

Alternate gene names: NA

Gene position: 4214185-4213178 (Counterclockwise)

Preceding gene: 113476320

Following gene: 113476317

Centisome position: 54.38

GC content: 35.81

Gene sequence:

>1008_bases
ATGACAAAAGAAACATTCGACTTTGTTATCCCCCTCTACAAAGTGCGTTGGAATACCCAAGCTGTCCTAGAAGGAATTAG
TCATCACTACAAACCTCAGACTATCCACATAATAGCCCCAAAAACCGAAGTTCAATTATTAGAACAGAAAGTTAAAGAAT
GGCAAGTTGCTCCAGTTTCTGCTCACAAAGAAGAATACTTTTTTCAAAATCATGGTCTAACAAAAGAAGCAATTTGTTCA
GAACTTGATTTAGGTAAATCACTTTATAATCCTGGTTGGTTTTATCAGCAGTTATTAAAACTTGGTGCTTACGAAGGTAT
TGATAACCTAAGTGAATGGTTTGTTGTTTGGGATAGCGACCTACTTCCTGTTAATACTTGGCCACTCATCAGTAATCATC
AAGAAACTACACAACACAAATTTGCCCTTCTGCAACACAATCAATATGGTAATCCTCATATTGTATCCAAATGGGCTGAA
TGGATTACTTCCGTACTTGGGGTTGAACCACTTACAGACCAGGAAGGTACTTTTGTTCCACATCATATGTGGTTTAAAAA
AGAACATTTAGAATCATTTAAAAACCAAGTAAAAAGCTATTTTCAATCACAGGAAAACTGGTTATTACTCATGATGCGCT
CTGCTAATCAATTTGAAACCTTTAGTGAATACTGGTCTTACATTTCATGGGTAGCAGCAAAAGCTCCTGCTGACCTAGCT
TTTTATCCATACGAAAATTACGGAGCTACAACTGAGCGATTTTTTGATGATGGTACTGGCCTATTTTCTGCTGCATTGAG
AAATTATCAGTCGAAGATATCTGATGGAGCTCCCTTTTCTGTTTCTTACAAAGAAATAGAATTATTTATTAAAGAGAAAT
ATGAATCAGATTCTCTTCCATCCTCTTTATCTTTTGAAAGTAACCCACGACATCTTAAAAAGGATCGAAAGAATATGCAT
ATTGAAGAAATTTGTTCTCGTTGGAATCCTCGCCAATCTGAAGTATAA

Upstream 100 bases:

>100_bases
CACCAATATTAGCTTATTAGCTAAAAATCAAAAGTATTCTGAGTGGAAAAACTCAAAAAGTTAACTTGTCTGTACTATAT
AGAGAAAACTGCCAAAAATT

Downstream 100 bases:

>100_bases
CTATGTACAAACAAAAATAGAGTTCAAATTTAAGTTTTACTATCATTGTAGACTGCATGGTCTTAACTCTTGACAATAAG
TACAAAATCTAGAATAGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MTKETFDFVIPLYKVRWNTQAVLEGISHHYKPQTIHIIAPKTEVQLLEQKVKEWQVAPVSAHKEEYFFQNHGLTKEAICS
ELDLGKSLYNPGWFYQQLLKLGAYEGIDNLSEWFVVWDSDLLPVNTWPLISNHQETTQHKFALLQHNQYGNPHIVSKWAE
WITSVLGVEPLTDQEGTFVPHHMWFKKEHLESFKNQVKSYFQSQENWLLLMMRSANQFETFSEYWSYISWVAAKAPADLA
FYPYENYGATTERFFDDGTGLFSAALRNYQSKISDGAPFSVSYKEIELFIKEKYESDSLPSSLSFESNPRHLKKDRKNMH
IEEICSRWNPRQSEV

Sequences:

>Translated_335_residues
MTKETFDFVIPLYKVRWNTQAVLEGISHHYKPQTIHIIAPKTEVQLLEQKVKEWQVAPVSAHKEEYFFQNHGLTKEAICS
ELDLGKSLYNPGWFYQQLLKLGAYEGIDNLSEWFVVWDSDLLPVNTWPLISNHQETTQHKFALLQHNQYGNPHIVSKWAE
WITSVLGVEPLTDQEGTFVPHHMWFKKEHLESFKNQVKSYFQSQENWLLLMMRSANQFETFSEYWSYISWVAAKAPADLA
FYPYENYGATTERFFDDGTGLFSAALRNYQSKISDGAPFSVSYKEIELFIKEKYESDSLPSSLSFESNPRHLKKDRKNMH
IEEICSRWNPRQSEV
>Mature_334_residues
TKETFDFVIPLYKVRWNTQAVLEGISHHYKPQTIHIIAPKTEVQLLEQKVKEWQVAPVSAHKEEYFFQNHGLTKEAICSE
LDLGKSLYNPGWFYQQLLKLGAYEGIDNLSEWFVVWDSDLLPVNTWPLISNHQETTQHKFALLQHNQYGNPHIVSKWAEW
ITSVLGVEPLTDQEGTFVPHHMWFKKEHLESFKNQVKSYFQSQENWLLLMMRSANQFETFSEYWSYISWVAAKAPADLAF
YPYENYGATTERFFDDGTGLFSAALRNYQSKISDGAPFSVSYKEIELFIKEKYESDSLPSSLSFESNPRHLKKDRKNMHI
EEICSRWNPRQSEV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39324; Mature: 39192

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKETFDFVIPLYKVRWNTQAVLEGISHHYKPQTIHIIAPKTEVQLLEQKVKEWQVAPVS
CCCCHHHHHHHHHHEECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCC
AHKEEYFFQNHGLTKEAICSELDLGKSLYNPGWFYQQLLKLGAYEGIDNLSEWFVVWDSD
CHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHEEEEECCC
LLPVNTWPLISNHQETTQHKFALLQHNQYGNPHIVSKWAEWITSVLGVEPLTDQEGTFVP
EECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
HHMWFKKEHLESFKNQVKSYFQSQENWLLLMMRSANQFETFSEYWSYISWVAAKAPADLA
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEE
FYPYENYGATTERFFDDGTGLFSAALRNYQSKISDGAPFSVSYKEIELFIKEKYESDSLP
ECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCC
SSLSFESNPRHLKKDRKNMHIEEICSRWNPRQSEV
CCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TKETFDFVIPLYKVRWNTQAVLEGISHHYKPQTIHIIAPKTEVQLLEQKVKEWQVAPVS
CCCHHHHHHHHHHEECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCC
AHKEEYFFQNHGLTKEAICSELDLGKSLYNPGWFYQQLLKLGAYEGIDNLSEWFVVWDSD
CHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHEEEEECCC
LLPVNTWPLISNHQETTQHKFALLQHNQYGNPHIVSKWAEWITSVLGVEPLTDQEGTFVP
EECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
HHMWFKKEHLESFKNQVKSYFQSQENWLLLMMRSANQFETFSEYWSYISWVAAKAPADLA
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEE
FYPYENYGATTERFFDDGTGLFSAALRNYQSKISDGAPFSVSYKEIELFIKEKYESDSLP
ECCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCC
SSLSFESNPRHLKKDRKNMHIEEICSRWNPRQSEV
CCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA