| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is bcp [H]
Identifier: 113476304
GI number: 113476304
Start: 4181555
End: 4182106
Strand: Reverse
Name: bcp [H]
Synonym: Tery_2703
Alternate gene names: 113476304
Gene position: 4182106-4181555 (Counterclockwise)
Preceding gene: 113476308
Following gene: 113476303
Centisome position: 53.96
GC content: 36.78
Gene sequence:
>552_bases ATGAGATCTCGTCGGCATTTTCAGACCATATTTTTAGTTATTTGTCTAGCTCTAATAACTTGGTTGAATTTTATTCCCAA TGCTTGGGCCCTTGGAGGCAAACTACCTGAGTTAGATCAACCAGCACCAGAATTTACCCTGCCCACTAACATAGGAGATA GAGAAATTTCTTTATCAGATTATCGTGGTCAGTGGGTAGTACTTTATTTTTATCCTAAAGATTTCACTTCTGGTTGTACA ATTGAAGCCCGTAGGTTCCAGCAAGACTTACCAAAATACAGAGAGCGAAACACTCAAATTTTAGGTGTTAGTGCAGATGA TATAAACTCTCACCAAGAATTTTGTGATTCTGAAGGTTTAAAATTTCCGTTGTTAGCTGATACGGATGGAACTGTAAGTA AAGCTTACGGTTCGTGGCTAAACTTTTTTTCTATGAGACATACTTTTATTATTAACCCAGGTGGGATTTTGCAGGAGATA TTTCTAGGAGTAAAACCCACTATTCATAGTCAAGAAGTTTTATCAAGTTTGGATAATTTACAGCAGACCTAA
Upstream 100 bases:
>100_bases GATGCTCGTTTAGATGGGACAATATATAGATAATTTTCTACATAAAATTTGTTCCACAATTTATGTAAACTTATATAAAG TATAATTTTGATTAGCAATT
Downstream 100 bases:
>100_bases TTAATATCAGTTTCTGTCAAATCATCTGTTAGCTGATACGGATGGAACTATAAGTAAAGCTTACGGTTCGTGGCTAAACT TTTTTTCTATGAGACATACT
Product: redoxin
Products: NA
Alternate protein names: Bacterioferritin comigratory protein homolog; Thioredoxin reductase [H]
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MRSRRHFQTIFLVICLALITWLNFIPNAWALGGKLPELDQPAPEFTLPTNIGDREISLSDYRGQWVVLYFYPKDFTSGCT IEARRFQQDLPKYRERNTQILGVSADDINSHQEFCDSEGLKFPLLADTDGTVSKAYGSWLNFFSMRHTFIINPGGILQEI FLGVKPTIHSQEVLSSLDNLQQT
Sequences:
>Translated_183_residues MRSRRHFQTIFLVICLALITWLNFIPNAWALGGKLPELDQPAPEFTLPTNIGDREISLSDYRGQWVVLYFYPKDFTSGCT IEARRFQQDLPKYRERNTQILGVSADDINSHQEFCDSEGLKFPLLADTDGTVSKAYGSWLNFFSMRHTFIINPGGILQEI FLGVKPTIHSQEVLSSLDNLQQT >Mature_183_residues MRSRRHFQTIFLVICLALITWLNFIPNAWALGGKLPELDQPAPEFTLPTNIGDREISLSDYRGQWVVLYFYPKDFTSGCT IEARRFQQDLPKYRERNTQILGVSADDINSHQEFCDSEGLKFPLLADTDGTVSKAYGSWLNFFSMRHTFIINPGGILQEI FLGVKPTIHSQEVLSSLDNLQQT
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI5453549, Length=159, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=2e-14, Organism=Homo sapiens, GI32189392, Length=158, Percent_Identity=34.1772151898734, Blast_Score=75, Evalue=3e-14, Organism=Homo sapiens, GI4505591, Length=146, Percent_Identity=31.5068493150685, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI32455266, Length=146, Percent_Identity=31.5068493150685, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI32455264, Length=146, Percent_Identity=31.5068493150685, Blast_Score=73, Evalue=1e-13, Organism=Homo sapiens, GI5802974, Length=148, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=7e-13, Organism=Homo sapiens, GI32483377, Length=128, Percent_Identity=28.90625, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI33188454, Length=119, Percent_Identity=32.7731092436975, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1788825, Length=144, Percent_Identity=32.6388888888889, Blast_Score=86, Evalue=1e-18, Organism=Caenorhabditis elegans, GI193204376, Length=144, Percent_Identity=31.9444444444444, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI32565831, Length=144, Percent_Identity=31.9444444444444, Blast_Score=73, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6319407, Length=184, Percent_Identity=29.8913043478261, Blast_Score=70, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323613, Length=122, Percent_Identity=33.6065573770492, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI17738015, Length=156, Percent_Identity=36.5384615384615, Blast_Score=92, Evalue=1e-19, Organism=Drosophila melanogaster, GI24656348, Length=145, Percent_Identity=35.1724137931034, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI17864676, Length=145, Percent_Identity=35.1724137931034, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI17157991, Length=161, Percent_Identity=31.6770186335404, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24641739, Length=161, Percent_Identity=31.6770186335404, Blast_Score=74, Evalue=7e-14,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 20918; Mature: 20918
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSRRHFQTIFLVICLALITWLNFIPNAWALGGKLPELDQPAPEFTLPTNIGDREISLSD CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCEECCCCCCCCEEEEEC YRGQWVVLYFYPKDFTSGCTIEARRFQQDLPKYRERNTQILGVSADDINSHQEFCDSEGL CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHCCHHHHHHHHCCCC KFPLLADTDGTVSKAYGSWLNFFSMRHTFIINPGGILQEIFLGVKPTIHSQEVLSSLDNL EEEEEECCCCHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHH QQT CCC >Mature Secondary Structure MRSRRHFQTIFLVICLALITWLNFIPNAWALGGKLPELDQPAPEFTLPTNIGDREISLSD CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCEECCCCCCCCEEEEEC YRGQWVVLYFYPKDFTSGCTIEARRFQQDLPKYRERNTQILGVSADDINSHQEFCDSEGL CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECHHCCHHHHHHHHCCCC KFPLLADTDGTVSKAYGSWLNFFSMRHTFIINPGGILQEIFLGVKPTIHSQEVLSSLDNL EEEEEECCCCHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHH QQT CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]