| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476277
Identifier: 113476277
GI number: 113476277
Start: 4142265
End: 4143515
Strand: Reverse
Name: 113476277
Synonym: Tery_2674
Alternate gene names: NA
Gene position: 4143515-4142265 (Counterclockwise)
Preceding gene: 113476278
Following gene: 113476276
Centisome position: 53.46
GC content: 36.93
Gene sequence:
>1251_bases ATGGGCGACATGACTGATACTTCAATCCCAAATGATGCTAAATCAAAGTTAAAGAAAGAAAGTTTCCTATTTTGGGCATT TTTGAAAATTGGGAGTACGGCTTTTGGGGGCTTTATGGCACTAGTTTCAGTGTGTGAAAGTATGATTGTTCAACAACATA AGCTACTATCTCATGAAGAAATGCTTGATGGTATTTCTCTAGCAACAGTTCTTCCCGGACCGGTTGCTGTAAATGTTGTT GCTTACATAGGTTATAAAATTCGAGGGATTAGAGGAGCGTTTGCTAGCACTACTGGAGTATTGCTACCAACTTATCTTCT CGTTGTCAGCTTTACGGCTTTTTACTTTCGAGTAGGTGAAATTTCTGCCATTAGTAAAGCTTTTGCTGGATTTATCCCAG CTATGGTTGCCATTATATTAGTAGCTATATGGCGACTGAGCAAAAAAACAATTAGAACACTTAAAAATTGGAAGTCTATT TCAATTGCTGTTGCTGCCTTTATTATTCTCAAGTTTGTAGGTGGATTTTACACAACTTTACTTATTGTACTAGGGTCTGG AATTTTTGGTTACCTTTTATATTATGATGCTACTGCTAGTGAACTATCTACTAGTAATATCTCTAGTCCTATCACTTCTC CATTAATCTCAAAGACAAAATTGCTTCTTTCTTCCTTTGTTCTCTCAGCATTCTTGGTTTTGTATTTAGTTCCACTTCCT TTTTTGGAAAATACTAGTCTAGCTAAACTTTTTATCGTTTTTTCAGGGATGAGCCTAACTTTGTTTGGCAGTGGTTATGT TTTCATTCCTATGATTCAAGAGATTGTTGTCAATAATTATGGATGGGTTACCCAAACAGAATTTGCGAGTGCGATCGCTT TAAGTCAAATAACACCTGGTCCAATCCTCATTAGTGCAGCTTTCATTGGTTATGCCGTCAAGGGAATACTAGGTTCTTTG GTTGCAACTATTGGTATCTTTTTCCCCCCCGCAATGTTGATGATTACTTGTTCCGACTTACTAGAACAGATTAAGAATTC GTCTACAATTCAGACCGCATTAAAAGGCGTTCGTCCTGCTGTAATTGGTATGATTTTTGCTGCAGCATTGATTTTATTAC AAGGTGTGAAAATTCATTGGGTCTCAGCTTTAATTTTAATGGGTGGGTTGTTTGCTATCTTACGCTTCAAAGTTGATGTG ATTTTGGTAATTCCCGTTGCAGGAATCTTGGGAATACTACTTTATCCATAA
Upstream 100 bases:
>100_bases TCTAAAAATGTCCTAACCTTAGCACGTAGCGCTATATAAGGTTTTAAGATTATTTTCAATCTATTTTTTTCAAAAGTCCA GTTAGAAGGAGGTTTGTAAA
Downstream 100 bases:
>100_bases ATGTACCTCAAATTGATTCCTTCTTTGGCAAGTTGACGATCTTATTCTGCAAACGCCATATGTAGGAGCGAATGGCATTC GTCCTAACGCTGGTGTAGTG
Product: chromate transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MGDMTDTSIPNDAKSKLKKESFLFWAFLKIGSTAFGGFMALVSVCESMIVQQHKLLSHEEMLDGISLATVLPGPVAVNVV AYIGYKIRGIRGAFASTTGVLLPTYLLVVSFTAFYFRVGEISAISKAFAGFIPAMVAIILVAIWRLSKKTIRTLKNWKSI SIAVAAFIILKFVGGFYTTLLIVLGSGIFGYLLYYDATASELSTSNISSPITSPLISKTKLLLSSFVLSAFLVLYLVPLP FLENTSLAKLFIVFSGMSLTLFGSGYVFIPMIQEIVVNNYGWVTQTEFASAIALSQITPGPILISAAFIGYAVKGILGSL VATIGIFFPPAMLMITCSDLLEQIKNSSTIQTALKGVRPAVIGMIFAAALILLQGVKIHWVSALILMGGLFAILRFKVDV ILVIPVAGILGILLYP
Sequences:
>Translated_416_residues MGDMTDTSIPNDAKSKLKKESFLFWAFLKIGSTAFGGFMALVSVCESMIVQQHKLLSHEEMLDGISLATVLPGPVAVNVV AYIGYKIRGIRGAFASTTGVLLPTYLLVVSFTAFYFRVGEISAISKAFAGFIPAMVAIILVAIWRLSKKTIRTLKNWKSI SIAVAAFIILKFVGGFYTTLLIVLGSGIFGYLLYYDATASELSTSNISSPITSPLISKTKLLLSSFVLSAFLVLYLVPLP FLENTSLAKLFIVFSGMSLTLFGSGYVFIPMIQEIVVNNYGWVTQTEFASAIALSQITPGPILISAAFIGYAVKGILGSL VATIGIFFPPAMLMITCSDLLEQIKNSSTIQTALKGVRPAVIGMIFAAALILLQGVKIHWVSALILMGGLFAILRFKVDV ILVIPVAGILGILLYP >Mature_415_residues GDMTDTSIPNDAKSKLKKESFLFWAFLKIGSTAFGGFMALVSVCESMIVQQHKLLSHEEMLDGISLATVLPGPVAVNVVA YIGYKIRGIRGAFASTTGVLLPTYLLVVSFTAFYFRVGEISAISKAFAGFIPAMVAIILVAIWRLSKKTIRTLKNWKSIS IAVAAFIILKFVGGFYTTLLIVLGSGIFGYLLYYDATASELSTSNISSPITSPLISKTKLLLSSFVLSAFLVLYLVPLPF LENTSLAKLFIVFSGMSLTLFGSGYVFIPMIQEIVVNNYGWVTQTEFASAIALSQITPGPILISAAFIGYAVKGILGSLV ATIGIFFPPAMLMITCSDLLEQIKNSSTIQTALKGVRPAVIGMIFAAALILLQGVKIHWVSALILMGGLFAILRFKVDVI LVIPVAGILGILLYP
Specific function: Unknown
COG id: COG2059
COG function: function code P; Chromate transport protein ChrA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003370 - InterPro: IPR014047 [H]
Pfam domain/function: PF02417 Chromate_transp [H]
EC number: NA
Molecular weight: Translated: 44731; Mature: 44600
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDMTDTSIPNDAKSKLKKESFLFWAFLKIGSTAFGGFMALVSVCESMIVQQHKLLSHEE CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLDGISLATVLPGPVAVNVVAYIGYKIRGIRGAFASTTGVLLPTYLLVVSFTAFYFRVGE HHCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISAISKAFAGFIPAMVAIILVAIWRLSKKTIRTLKNWKSISIAVAAFIILKFVGGFYTTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIVLGSGIFGYLLYYDATASELSTSNISSPITSPLISKTKLLLSSFVLSAFLVLYLVPLP HHHHHCCHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FLENTSLAKLFIVFSGMSLTLFGSGYVFIPMIQEIVVNNYGWVTQTEFASAIALSQITPG CCCCCHHHHHHHHHCCCEEEEEECCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC PILISAAFIGYAVKGILGSLVATIGIFFPPAMLMITCSDLLEQIKNSSTIQTALKGVRPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHH VIGMIFAAALILLQGVKIHWVSALILMGGLFAILRFKVDVILVIPVAGILGILLYP HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GDMTDTSIPNDAKSKLKKESFLFWAFLKIGSTAFGGFMALVSVCESMIVQQHKLLSHEE CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLDGISLATVLPGPVAVNVVAYIGYKIRGIRGAFASTTGVLLPTYLLVVSFTAFYFRVGE HHCCCHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISAISKAFAGFIPAMVAIILVAIWRLSKKTIRTLKNWKSISIAVAAFIILKFVGGFYTTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIVLGSGIFGYLLYYDATASELSTSNISSPITSPLISKTKLLLSSFVLSAFLVLYLVPLP HHHHHCCHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FLENTSLAKLFIVFSGMSLTLFGSGYVFIPMIQEIVVNNYGWVTQTEFASAIALSQITPG CCCCCHHHHHHHHHCCCEEEEEECCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC PILISAAFIGYAVKGILGSLVATIGIFFPPAMLMITCSDLLEQIKNSSTIQTALKGVRPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHH VIGMIFAAALILLQGVKIHWVSALILMGGLFAILRFKVDVILVIPVAGILGILLYP HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]