| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476227
Identifier: 113476227
GI number: 113476227
Start: 4045757
End: 4046521
Strand: Reverse
Name: 113476227
Synonym: Tery_2620
Alternate gene names: NA
Gene position: 4046521-4045757 (Counterclockwise)
Preceding gene: 113476228
Following gene: 113476226
Centisome position: 52.21
GC content: 41.05
Gene sequence:
>765_bases ATGCCTAGACAACCGCGCCAACTTTTCCCCCAATATTCCTATCATGTTACTTCTCGCTGCAATAACCGAGAGTTTCATTT GACTCGTCTCCAATGTCGCCAAATATTTTTGTTTGCTTTGAAAAAGGCTTTAGATAAATTTTCCTTTAAACTTTATGCTC TTTGTATTATGAGTAATCATGTTCATTATTTACTAGAGCCCTCCCAACCACAAGAACTACCTAAAATTATGCACTGGCTC AACTGGTATACCGCTATGTGTTTTAACCAGATGCTTAACCGTACGGGGCATTTTTGGGAGAAAAGATACCACAGCACCGG GTTTGACAATACTGATAAAAAACGAGCTTTGAATACTCTTCGCTATATTCATGCTAACCCAAAAGCTGCTAATATCCAGT CTGGCTTTTTCTATGACTTTTCTAACTATGGCACTTATGACCGTCTCACTGATGATGGTTTGACACAGTGGCATCCAGCT TTTTTGTCTCTGGGAAAAACTCTTGATGAATGTGCTCAAAATTATAGGGGCTTTTGCCGGAAATATAAATCTCGACCTAA GTCTCAAAGGCGCCGTCGGTGGGGTAGTAGGTTTTTGCCTAAGGTGAAAAAAAAGAAAAAAAATAAGGCTTCTCCAGGAC AAATGCGACTCCCTTGGGCTGACTGGGAACTTCCCTCAAATTTGGTGGTGGAGGTGGCCAGACAGTTGGTTTTGGCTAAT TGTTATGACCCGGAGGTGGCTATGCAATTTTTTGATGATCAGTAA
Upstream 100 bases:
>100_bases TTTCCGTCAAAAAATCAGAAATAACTGAAATAAAGATCAACTAGCCACAACTCATAAATAATAAAAAAAAAAGCTCATAA CTGATAACTGACAACCGATA
Downstream 100 bases:
>100_bases AATTAGTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTTT TGGTTTTTGGTTTTTGGTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 254; Mature: 253
Protein sequence:
>254_residues MPRQPRQLFPQYSYHVTSRCNNREFHLTRLQCRQIFLFALKKALDKFSFKLYALCIMSNHVHYLLEPSQPQELPKIMHWL NWYTAMCFNQMLNRTGHFWEKRYHSTGFDNTDKKRALNTLRYIHANPKAANIQSGFFYDFSNYGTYDRLTDDGLTQWHPA FLSLGKTLDECAQNYRGFCRKYKSRPKSQRRRRWGSRFLPKVKKKKKNKASPGQMRLPWADWELPSNLVVEVARQLVLAN CYDPEVAMQFFDDQ
Sequences:
>Translated_254_residues MPRQPRQLFPQYSYHVTSRCNNREFHLTRLQCRQIFLFALKKALDKFSFKLYALCIMSNHVHYLLEPSQPQELPKIMHWL NWYTAMCFNQMLNRTGHFWEKRYHSTGFDNTDKKRALNTLRYIHANPKAANIQSGFFYDFSNYGTYDRLTDDGLTQWHPA FLSLGKTLDECAQNYRGFCRKYKSRPKSQRRRRWGSRFLPKVKKKKKNKASPGQMRLPWADWELPSNLVVEVARQLVLAN CYDPEVAMQFFDDQ >Mature_253_residues PRQPRQLFPQYSYHVTSRCNNREFHLTRLQCRQIFLFALKKALDKFSFKLYALCIMSNHVHYLLEPSQPQELPKIMHWLN WYTAMCFNQMLNRTGHFWEKRYHSTGFDNTDKKRALNTLRYIHANPKAANIQSGFFYDFSNYGTYDRLTDDGLTQWHPAF LSLGKTLDECAQNYRGFCRKYKSRPKSQRRRRWGSRFLPKVKKKKKNKASPGQMRLPWADWELPSNLVVEVARQLVLANC YDPEVAMQFFDDQ
Specific function: Unknown
COG id: COG1943
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30410; Mature: 30279
Theoretical pI: Translated: 10.31; Mature: 10.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRQPRQLFPQYSYHVTSRCNNREFHLTRLQCRQIFLFALKKALDKFSFKLYALCIMSNH CCCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VHYLLEPSQPQELPKIMHWLNWYTAMCFNQMLNRTGHFWEKRYHSTGFDNTDKKRALNTL EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH RYIHANPKAANIQSGFFYDFSNYGTYDRLTDDGLTQWHPAFLSLGKTLDECAQNYRGFCR HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KYKSRPKSQRRRRWGSRFLPKVKKKKKNKASPGQMRLPWADWELPSNLVVEVARQLVLAN HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHC CYDPEVAMQFFDDQ CCCHHHHHHHHCCC >Mature Secondary Structure PRQPRQLFPQYSYHVTSRCNNREFHLTRLQCRQIFLFALKKALDKFSFKLYALCIMSNH CCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VHYLLEPSQPQELPKIMHWLNWYTAMCFNQMLNRTGHFWEKRYHSTGFDNTDKKRALNTL EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH RYIHANPKAANIQSGFFYDFSNYGTYDRLTDDGLTQWHPAFLSLGKTLDECAQNYRGFCR HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH KYKSRPKSQRRRRWGSRFLPKVKKKKKNKASPGQMRLPWADWELPSNLVVEVARQLVLAN HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHC CYDPEVAMQFFDDQ CCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA