| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476138
Identifier: 113476138
GI number: 113476138
Start: 3887494
End: 3888420
Strand: Reverse
Name: 113476138
Synonym: Tery_2520
Alternate gene names: NA
Gene position: 3888420-3887494 (Counterclockwise)
Preceding gene: 113476139
Following gene: 113476137
Centisome position: 50.17
GC content: 31.82
Gene sequence:
>927_bases ATGAGTCGTGGCATATATATTACTGCAAATGACAAAGCCCTCGAACAGGGTATTGCCCTATTAAATAGCATCCGTAAATA TGATAGGGATACACCAATTATTTTGATTCCCTATGATGATAATTATCAAATAGTCGCAGAACTTTTTTCAAAAGATTATG GAGTTACAATTTATCAAGATTTAGAATTTATTGAGAGATTATCAAACAAACTACAACAAATTTTTGGAAATAAATTCTTT GCTCGACCAAATCAGTTTCGTAAGCAGGTTTGTTGGTTTGGAGAATTTGATGAGTTTTTATATATAGATACAGATATTGT AGTTTTTGATAGAATTATTGATAATCTTAACTATCTAAATGAGTATGATTTCTTGTGTTTTGATTATCAACATTTAGGAG GGATTAAGAATATCTTTACTCCAGAGATTTATCAAGTTTTTAGCAAAGAAGAACTTCTGGAAACTTTTAACGGAGGATGG TGGGCATCCAAAAAAAATTTGATTTCAGAACAAGATTTGTATGAGACGTTTACTGAATGTGCAGCTCATCCAGAATACTT TGATTTTTCTCAGAAAACTTCCGATCAACCAATTATTAATTATATGATATTGAAGCGAATTAAAAAGCGTTTCAATATTA TTAATAGACCAGAAAAAGCACCTGGAAGTTGGGCAGGTACATCGCATTTTTATCGAGAAGGTGATCGACTGATAGATTCA AATGTGAATCAACCTTTAGAATATCTACATTGGGCAGGAATTCGGATTCAACCAGGTTGTCCTTATTGGGATATTTGGGA GTATTATAGATATTTGGGGGAAGCTAAACCTACTTACTATCCTCAGACAACTGAAAAGAATAAAAGTCTAGGAGAAAAAT TTATTGATAAACTCAAAAATATAGCTCGGCATATCAAGAGAAGTTAA
Upstream 100 bases:
>100_bases CAGTATTTACGACTAAACCAAAACCATATAAAACTACACCTAATCTTTTTCAGCGTGTTTTAAAGAAACTAAAATTAACT CACAAATAGAGAAAAATCTG
Downstream 100 bases:
>100_bases GGTCATTTCAGTTATCAGTGTTATACTTAAAATTACTTCCTAATTGTTCCACTTATTCAACCCAAATAACTTTAAGCATT TCTTGTTGTTATAAAATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MSRGIYITANDKALEQGIALLNSIRKYDRDTPIILIPYDDNYQIVAELFSKDYGVTIYQDLEFIERLSNKLQQIFGNKFF ARPNQFRKQVCWFGEFDEFLYIDTDIVVFDRIIDNLNYLNEYDFLCFDYQHLGGIKNIFTPEIYQVFSKEELLETFNGGW WASKKNLISEQDLYETFTECAAHPEYFDFSQKTSDQPIINYMILKRIKKRFNIINRPEKAPGSWAGTSHFYREGDRLIDS NVNQPLEYLHWAGIRIQPGCPYWDIWEYYRYLGEAKPTYYPQTTEKNKSLGEKFIDKLKNIARHIKRS
Sequences:
>Translated_308_residues MSRGIYITANDKALEQGIALLNSIRKYDRDTPIILIPYDDNYQIVAELFSKDYGVTIYQDLEFIERLSNKLQQIFGNKFF ARPNQFRKQVCWFGEFDEFLYIDTDIVVFDRIIDNLNYLNEYDFLCFDYQHLGGIKNIFTPEIYQVFSKEELLETFNGGW WASKKNLISEQDLYETFTECAAHPEYFDFSQKTSDQPIINYMILKRIKKRFNIINRPEKAPGSWAGTSHFYREGDRLIDS NVNQPLEYLHWAGIRIQPGCPYWDIWEYYRYLGEAKPTYYPQTTEKNKSLGEKFIDKLKNIARHIKRS >Mature_307_residues SRGIYITANDKALEQGIALLNSIRKYDRDTPIILIPYDDNYQIVAELFSKDYGVTIYQDLEFIERLSNKLQQIFGNKFFA RPNQFRKQVCWFGEFDEFLYIDTDIVVFDRIIDNLNYLNEYDFLCFDYQHLGGIKNIFTPEIYQVFSKEELLETFNGGWW ASKKNLISEQDLYETFTECAAHPEYFDFSQKTSDQPIINYMILKRIKKRFNIINRPEKAPGSWAGTSHFYREGDRLIDSN VNQPLEYLHWAGIRIQPGCPYWDIWEYYRYLGEAKPTYYPQTTEKNKSLGEKFIDKLKNIARHIKRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36693; Mature: 36562
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRGIYITANDKALEQGIALLNSIRKYDRDTPIILIPYDDNYQIVAELFSKDYGVTIYQD CCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEHHHH LEFIERLSNKLQQIFGNKFFARPNQFRKQVCWFGEFDEFLYIDTDIVVFDRIIDNLNYLN HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHC EYDFLCFDYQHLGGIKNIFTPEIYQVFSKEELLETFNGGWWASKKNLISEQDLYETFTEC CCCCEEECHHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHH AAHPEYFDFSQKTSDQPIINYMILKRIKKRFNIINRPEKAPGSWAGTSHFYREGDRLIDS HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHC NVNQPLEYLHWAGIRIQPGCPYWDIWEYYRYLGEAKPTYYPQTTEKNKSLGEKFIDKLKN CCCHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH IARHIKRS HHHHHCCC >Mature Secondary Structure SRGIYITANDKALEQGIALLNSIRKYDRDTPIILIPYDDNYQIVAELFSKDYGVTIYQD CCCEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEHHHH LEFIERLSNKLQQIFGNKFFARPNQFRKQVCWFGEFDEFLYIDTDIVVFDRIIDNLNYLN HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHC EYDFLCFDYQHLGGIKNIFTPEIYQVFSKEELLETFNGGWWASKKNLISEQDLYETFTEC CCCCEEECHHHHCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHH AAHPEYFDFSQKTSDQPIINYMILKRIKKRFNIINRPEKAPGSWAGTSHFYREGDRLIDS HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHC NVNQPLEYLHWAGIRIQPGCPYWDIWEYYRYLGEAKPTYYPQTTEKNKSLGEKFIDKLKN CCCHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH IARHIKRS HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA