Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476116
Identifier: 113476116
GI number: 113476116
Start: 3849056
End: 3849985
Strand: Reverse
Name: 113476116
Synonym: Tery_2497
Alternate gene names: NA
Gene position: 3849985-3849056 (Counterclockwise)
Preceding gene: 113476118
Following gene: 113476113
Centisome position: 49.68
GC content: 32.37
Gene sequence:
>930_bases ATGAAATTTGTTAGTCCTAAAATAGATTATGCTTTTAAAAAAATCTTCGGTTCGCAACAAAGTCAAGATATCTTGATTAG CTTTCTCAATGCCATAATTTATGGGGGGAAAAAAATTATTCAGTCTTTGACAATTGCTAATCCTTTTAATCCTGGTCAAT TGCTGAGTTTAAAAGATACATATTTAGATATCAAAGCTGTTTTAGTAGATGGTTCTATTGTAGTGATTGAAATGCAGGTT GCTAGAATGACTGGTTTTAATAAACGAGTAGCTTATAACCTAGCTAAAGCTTATGCAAATCAATTAGAAACAGGAGAAGA TTATCTCTTGCTGAATCCAGCTATAGGGGTAACAATTACAGACTTTATTTTGTTTGAAAATAATGAGGATATAATTAATA AGTTTGTCTTTCAACAAGAGACTAAAAAATTTAAGTTTCTGGAACAAGAATTACAACTATTTTTTGTAGAATTACCCAAG TTTAAGAAAAATTTGTCTGAGTTACATACTTTAAGTGATAAGTGGATTTATTTTCTCAAAAGTGCTAGCCGTTTAGATGA GATACCGGAGAATTTAAGAGAAGTTTCGGAAATAGAAAAGGCTTTAAATATTGCTAATAAAATTAACATGACAGCGGAAG AGTTAGACATAGTTGAGCGTCGAGGAATAGCAATGCAAGATGAAAGAGGACGGATAACTTATGCGGAACAACAAGGAGAG CGAAGAGGGGAACAAAAAGGCGAACAAAAAGGGAGAGGGCAATTAATAATACGTCAACTTAAAAAGCGTTTTGGAGAAGT TCCGGAGGCAATAACTAGTCAAATTGAGGGTTTATCAGTTGCACATTTGGATAATTTAGGGGAAGACTCTTTAGATTTTA ATAATTTGGAAGATTTGTTGAGTTGGTTGCATTTATTTGAGGATTTTTAA
Upstream 100 bases:
>100_bases TATAATTATGGTGTACACGAGAATCATAAAAATGTTAGTAAATATAAAGTCTGTAGATAACTATTTGACAATTTTAATTA TTAATTAGGAGAAAAAAATC
Downstream 100 bases:
>100_bases TATAAGTCAAGAGCTAAAAAGTTTGAGATAGATACAAAGTTTCAGGTGACTTTTTGTTACTGTAGTAGTTTCAAGGAAGA AGTAATTAAAGCAATAGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MKFVSPKIDYAFKKIFGSQQSQDILISFLNAIIYGGKKIIQSLTIANPFNPGQLLSLKDTYLDIKAVLVDGSIVVIEMQV ARMTGFNKRVAYNLAKAYANQLETGEDYLLLNPAIGVTITDFILFENNEDIINKFVFQQETKKFKFLEQELQLFFVELPK FKKNLSELHTLSDKWIYFLKSASRLDEIPENLREVSEIEKALNIANKINMTAEELDIVERRGIAMQDERGRITYAEQQGE RRGEQKGEQKGRGQLIIRQLKKRFGEVPEAITSQIEGLSVAHLDNLGEDSLDFNNLEDLLSWLHLFEDF
Sequences:
>Translated_309_residues MKFVSPKIDYAFKKIFGSQQSQDILISFLNAIIYGGKKIIQSLTIANPFNPGQLLSLKDTYLDIKAVLVDGSIVVIEMQV ARMTGFNKRVAYNLAKAYANQLETGEDYLLLNPAIGVTITDFILFENNEDIINKFVFQQETKKFKFLEQELQLFFVELPK FKKNLSELHTLSDKWIYFLKSASRLDEIPENLREVSEIEKALNIANKINMTAEELDIVERRGIAMQDERGRITYAEQQGE RRGEQKGEQKGRGQLIIRQLKKRFGEVPEAITSQIEGLSVAHLDNLGEDSLDFNNLEDLLSWLHLFEDF >Mature_309_residues MKFVSPKIDYAFKKIFGSQQSQDILISFLNAIIYGGKKIIQSLTIANPFNPGQLLSLKDTYLDIKAVLVDGSIVVIEMQV ARMTGFNKRVAYNLAKAYANQLETGEDYLLLNPAIGVTITDFILFENNEDIINKFVFQQETKKFKFLEQELQLFFVELPK FKKNLSELHTLSDKWIYFLKSASRLDEIPENLREVSEIEKALNIANKINMTAEELDIVERRGIAMQDERGRITYAEQQGE RRGEQKGEQKGRGQLIIRQLKKRFGEVPEAITSQIEGLSVAHLDNLGEDSLDFNNLEDLLSWLHLFEDF
Specific function: Unknown
COG id: COG5464
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35479; Mature: 35479
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFVSPKIDYAFKKIFGSQQSQDILISFLNAIIYGGKKIIQSLTIANPFNPGQLLSLKDT CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEHHH YLDIKAVLVDGSIVVIEMQVARMTGFNKRVAYNLAKAYANQLETGEDYLLLNPAIGVTIT HHEEEEEEECCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEE DFILFENNEDIINKFVFQQETKKFKFLEQELQLFFVELPKFKKNLSELHTLSDKWIYFLK EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SASRLDEIPENLREVSEIEKALNIANKINMTAEELDIVERRGIAMQDERGRITYAEQQGE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCCCEEEHHHHHH RRGEQKGEQKGRGQLIIRQLKKRFGEVPEAITSQIEGLSVAHLDNLGEDSLDFNNLEDLL HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHH SWLHLFEDF HHHHHHHCC >Mature Secondary Structure MKFVSPKIDYAFKKIFGSQQSQDILISFLNAIIYGGKKIIQSLTIANPFNPGQLLSLKDT CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEHHH YLDIKAVLVDGSIVVIEMQVARMTGFNKRVAYNLAKAYANQLETGEDYLLLNPAIGVTIT HHEEEEEEECCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEE DFILFENNEDIINKFVFQQETKKFKFLEQELQLFFVELPKFKKNLSELHTLSDKWIYFLK EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SASRLDEIPENLREVSEIEKALNIANKINMTAEELDIVERRGIAMQDERGRITYAEQQGE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCCCCEEEHHHHHH RRGEQKGEQKGRGQLIIRQLKKRFGEVPEAITSQIEGLSVAHLDNLGEDSLDFNNLEDLL HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHH SWLHLFEDF HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA