Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 113476118

GI number: 113476118

Start: 3855819

End: 3857666

Strand: Reverse

Name: yciR [C]

Synonym: Tery_2499

Alternate gene names: 113476118

Gene position: 3857666-3855819 (Counterclockwise)

Preceding gene: 113476119

Following gene: 113476116

Centisome position: 49.78

GC content: 33.12

Gene sequence:

>1848_bases
ATGATTGTTACACAAATACCAGGGGTTTGTTCATTGAGACTGATATTAAATTTAATAGCTACTATTTCGAGAATTCATAC
TTTTCATCTATTGAAAGGGTTAACGTCCTTGCTATTAACCTGTGATTATTTATCAATTTGGAAGAGCTTTAAGCAGTTTA
CTAATAAAATTTATCAGCTTATTCATTATATTTATAAATTACTTCAGCTCAACTCTGCCTTTTGGAAAAAGCTCAAGTCT
AAGGTGGATGATGTTTTATCTAGTGGTCGAAAAAAGTTGATTAAACTAAATGAACAAGCTATAGATTCTTCTATGCAAAT
TTATTATAATGATAATAATGATAATAATGAGGTAGCAAAGCAGGTAATTGTTAAAAAGCTCAAGAAACACAGACAAAAAC
AAGCTACACTTTTATATAAGGCATTTCACGATGGGCTGACGGGTTTACCAAACCGTAATTTGTTTTTTAATGAACTAAAA
CTAGTTTTACATCAGTCTAGAAAAGACCTAAGTTATAAGTATGGGGTTCTGTTTTTAGATCTAGATCGCTTTAAAGTAAT
TAATGATAGTTTGGGGCATGTTATTGGAGATCAAGTATTAGTCATCATCAGCAGGCGACTACAGAATTATATCAAAGCTT
CAGATACTGTGGCGAGGTTAGGAGGGGATGAGTTCACTATCTTACTAAGGTCTCTACCCGATGCTGACTATGCTACTAAA
GTAGCTATGAAAATTAATCAAGAACTTGCTCAACCAATTTATGTTGAAGGACATGAAATATTTACTACAGTAAGTATTGG
CATTGTTACTAATTGTAAACAGTTTAGTGATCAGCTCGGTGAAAATAGTTTTCCTATTTGTCCTATTTACAACCACCCAG
AAGATGTACTGCGAGCTGCAGATATTGCGATGTATCGGGCTAAAGATTTAGGTAAGGCAAGGTATGAGGTGTTTGATTTG
ACAATGCACAGAGAAGTTGTATCTTTATTAGAATTGGAAAATGATCTACGACGAGCTGTAGAAATGATTAAACAAAATCC
AGTAAATTCTCAGTTTTTTTTAAGTTACCAACCAATTATTTGTTTAACTACAAATAAAATTACTGGTTTTGAATGTTTGG
TACGCTGGGCTCATCCTACTAAAGGCTTAATTCAACCAGGAAAGTTTATCCCATTGGCAGAAGAAACGGGTTTAATTATT
CCTCTAGGAATGTGGATATTGCGAACGGCTTGTCATCAGTTGGCTGTTTGGCAGAAAAGGTTGACAGGGAGACATGTTTG
CTCTGGTTTGGCATATTCTGACTGTAATTTTATTGCTCATAATTTTACTATGAGTGTCAATATTTCTAGCAAGAATATCT
CACAACCAAATTTTTTGGAACAAGTTAATGAAATTTTGGCGGCAACAAATTGTCAACCTCATTGTTTGAATCTAGAAATT
ACTGAAAGTTTAATTATGACAAATGTTGATTTAGCTACTGCAGTTTTTGAGAAACTGAAAAATCAAAATATTAGATTATC
AATAGATGATTTTGGTACTGGTTATTCGTCGTTAAGTTATTTACATCAGTTTCCTATTAATACTATTAAAATTGACCGTT
CTTTTGTGAGTCAATTAGATTCGGATACAAGCGGTCAAACTTTAAAAATTGTGAGTGCTGTTATTGCATTGGCTAATAAT
TTAGATTTAGAAATAATTGCAGAAGGAATAGAAACTAAGGCTCAAATGAATCAGCTCAAGCAACTTAAGTGTCGCAAAGG
ACAGGGGTATTTTTTCTCAAAGCCATTGACAACTTCCAGTGTAAATGAACTACTTCAGTTTACCTCACTAACTAGTCCTT
TTCTTTAA

Upstream 100 bases:

>100_bases
ACCACAATATATATAATAATCTCGACTTGTTTGAATACATTTTTTATGAGGGTCTATTTGTATTCTTTATTTACAATATT
GTTTCAAAACTTTATATATA

Downstream 100 bases:

>100_bases
AGCAGCAGGAATATAAAATGAATTATGTTTATTTGTCAGATTGAGGTTTTTCTGCTGTATGTCTTAGATAAAATTAGAGG
GGTAAATAATTTTTTGTTGG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MIVTQIPGVCSLRLILNLIATISRIHTFHLLKGLTSLLLTCDYLSIWKSFKQFTNKIYQLIHYIYKLLQLNSAFWKKLKS
KVDDVLSSGRKKLIKLNEQAIDSSMQIYYNDNNDNNEVAKQVIVKKLKKHRQKQATLLYKAFHDGLTGLPNRNLFFNELK
LVLHQSRKDLSYKYGVLFLDLDRFKVINDSLGHVIGDQVLVIISRRLQNYIKASDTVARLGGDEFTILLRSLPDADYATK
VAMKINQELAQPIYVEGHEIFTTVSIGIVTNCKQFSDQLGENSFPICPIYNHPEDVLRAADIAMYRAKDLGKARYEVFDL
TMHREVVSLLELENDLRRAVEMIKQNPVNSQFFLSYQPIICLTTNKITGFECLVRWAHPTKGLIQPGKFIPLAEETGLII
PLGMWILRTACHQLAVWQKRLTGRHVCSGLAYSDCNFIAHNFTMSVNISSKNISQPNFLEQVNEILAATNCQPHCLNLEI
TESLIMTNVDLATAVFEKLKNQNIRLSIDDFGTGYSSLSYLHQFPINTIKIDRSFVSQLDSDTSGQTLKIVSAVIALANN
LDLEIIAEGIETKAQMNQLKQLKCRKGQGYFFSKPLTTSSVNELLQFTSLTSPFL

Sequences:

>Translated_615_residues
MIVTQIPGVCSLRLILNLIATISRIHTFHLLKGLTSLLLTCDYLSIWKSFKQFTNKIYQLIHYIYKLLQLNSAFWKKLKS
KVDDVLSSGRKKLIKLNEQAIDSSMQIYYNDNNDNNEVAKQVIVKKLKKHRQKQATLLYKAFHDGLTGLPNRNLFFNELK
LVLHQSRKDLSYKYGVLFLDLDRFKVINDSLGHVIGDQVLVIISRRLQNYIKASDTVARLGGDEFTILLRSLPDADYATK
VAMKINQELAQPIYVEGHEIFTTVSIGIVTNCKQFSDQLGENSFPICPIYNHPEDVLRAADIAMYRAKDLGKARYEVFDL
TMHREVVSLLELENDLRRAVEMIKQNPVNSQFFLSYQPIICLTTNKITGFECLVRWAHPTKGLIQPGKFIPLAEETGLII
PLGMWILRTACHQLAVWQKRLTGRHVCSGLAYSDCNFIAHNFTMSVNISSKNISQPNFLEQVNEILAATNCQPHCLNLEI
TESLIMTNVDLATAVFEKLKNQNIRLSIDDFGTGYSSLSYLHQFPINTIKIDRSFVSQLDSDTSGQTLKIVSAVIALANN
LDLEIIAEGIETKAQMNQLKQLKCRKGQGYFFSKPLTTSSVNELLQFTSLTSPFL
>Mature_615_residues
MIVTQIPGVCSLRLILNLIATISRIHTFHLLKGLTSLLLTCDYLSIWKSFKQFTNKIYQLIHYIYKLLQLNSAFWKKLKS
KVDDVLSSGRKKLIKLNEQAIDSSMQIYYNDNNDNNEVAKQVIVKKLKKHRQKQATLLYKAFHDGLTGLPNRNLFFNELK
LVLHQSRKDLSYKYGVLFLDLDRFKVINDSLGHVIGDQVLVIISRRLQNYIKASDTVARLGGDEFTILLRSLPDADYATK
VAMKINQELAQPIYVEGHEIFTTVSIGIVTNCKQFSDQLGENSFPICPIYNHPEDVLRAADIAMYRAKDLGKARYEVFDL
TMHREVVSLLELENDLRRAVEMIKQNPVNSQFFLSYQPIICLTTNKITGFECLVRWAHPTKGLIQPGKFIPLAEETGLII
PLGMWILRTACHQLAVWQKRLTGRHVCSGLAYSDCNFIAHNFTMSVNISSKNISQPNFLEQVNEILAATNCQPHCLNLEI
TESLIMTNVDLATAVFEKLKNQNIRLSIDDFGTGYSSLSYLHQFPINTIKIDRSFVSQLDSDTSGQTLKIVSAVIALANN
LDLEIIAEGIETKAQMNQLKQLKCRKGQGYFFSKPLTTSSVNELLQFTSLTSPFL

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=470, Percent_Identity=33.1914893617021, Blast_Score=256, Evalue=2e-69,
Organism=Escherichia coli, GI87081921, Length=461, Percent_Identity=32.1041214750542, Blast_Score=221, Evalue=9e-59,
Organism=Escherichia coli, GI226510982, Length=480, Percent_Identity=25.625, Blast_Score=166, Evalue=5e-42,
Organism=Escherichia coli, GI1787055, Length=276, Percent_Identity=31.8840579710145, Blast_Score=148, Evalue=1e-36,
Organism=Escherichia coli, GI87081845, Length=266, Percent_Identity=33.8345864661654, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI1786507, Length=249, Percent_Identity=33.3333333333333, Blast_Score=135, Evalue=7e-33,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=30.241935483871, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=31.3008130081301, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1790496, Length=267, Percent_Identity=29.9625468164794, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=31.9838056680162, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1788849, Length=276, Percent_Identity=27.8985507246377, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1786584, Length=192, Percent_Identity=30.2083333333333, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1788381, Length=242, Percent_Identity=29.7520661157025, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI87081977, Length=192, Percent_Identity=31.25, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787262, Length=186, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788956, Length=177, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87081881, Length=194, Percent_Identity=32.9896907216495, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082096, Length=214, Percent_Identity=28.5046728971963, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=173, Percent_Identity=32.9479768786127, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87082007, Length=186, Percent_Identity=30.1075268817204, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=30.0546448087432, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI145693134, Length=185, Percent_Identity=30.2702702702703, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=112, Percent_Identity=39.2857142857143, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87081974, Length=88, Percent_Identity=39.7727272727273, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 69854; Mature: 69854

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVTQIPGVCSLRLILNLIATISRIHTFHLLKGLTSLLLTCDYLSIWKSFKQFTNKIYQL
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHYIYKLLQLNSAFWKKLKSKVDDVLSSGRKKLIKLNEQAIDSSMQIYYNDNNDNNEVAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
QVIVKKLKKHRQKQATLLYKAFHDGLTGLPNRNLFFNELKLVLHQSRKDLSYKYGVLFLD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEE
LDRFKVINDSLGHVIGDQVLVIISRRLQNYIKASDTVARLGGDEFTILLRSLPDADYATK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCHHHHH
VAMKINQELAQPIYVEGHEIFTTVSIGIVTNCKQFSDQLGENSFPICPIYNHPEDVLRAA
HHHHHHHHHCCCEEECCCEEEEEEEHHHHHCHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
DIAMYRAKDLGKARYEVFDLTMHREVVSLLELENDLRRAVEMIKQNPVNSQFFLSYQPII
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEE
CLTTNKITGFECLVRWAHPTKGLIQPGKFIPLAEETGLIIPLGMWILRTACHQLAVWQKR
EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
LTGRHVCSGLAYSDCNFIAHNFTMSVNISSKNISQPNFLEQVNEILAATNCQPHCLNLEI
HHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECCEE
TESLIMTNVDLATAVFEKLKNQNIRLSIDDFGTGYSSLSYLHQFPINTIKIDRSFVSQLD
HHHHHHHCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHCC
SDTSGQTLKIVSAVIALANNLDLEIIAEGIETKAQMNQLKQLKCRKGQGYFFSKPLTTSS
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
VNELLQFTSLTSPFL
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MIVTQIPGVCSLRLILNLIATISRIHTFHLLKGLTSLLLTCDYLSIWKSFKQFTNKIYQL
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IHYIYKLLQLNSAFWKKLKSKVDDVLSSGRKKLIKLNEQAIDSSMQIYYNDNNDNNEVAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
QVIVKKLKKHRQKQATLLYKAFHDGLTGLPNRNLFFNELKLVLHQSRKDLSYKYGVLFLD
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEE
LDRFKVINDSLGHVIGDQVLVIISRRLQNYIKASDTVARLGGDEFTILLRSLPDADYATK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCHHHHH
VAMKINQELAQPIYVEGHEIFTTVSIGIVTNCKQFSDQLGENSFPICPIYNHPEDVLRAA
HHHHHHHHHCCCEEECCCEEEEEEEHHHHHCHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
DIAMYRAKDLGKARYEVFDLTMHREVVSLLELENDLRRAVEMIKQNPVNSQFFLSYQPII
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEE
CLTTNKITGFECLVRWAHPTKGLIQPGKFIPLAEETGLIIPLGMWILRTACHQLAVWQKR
EEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
LTGRHVCSGLAYSDCNFIAHNFTMSVNISSKNISQPNFLEQVNEILAATNCQPHCLNLEI
HHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECCEE
TESLIMTNVDLATAVFEKLKNQNIRLSIDDFGTGYSSLSYLHQFPINTIKIDRSFVSQLD
HHHHHHHCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHCC
SDTSGQTLKIVSAVIALANNLDLEIIAEGIETKAQMNQLKQLKCRKGQGYFFSKPLTTSS
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
VNELLQFTSLTSPFL
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]