Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476035
Identifier: 113476035
GI number: 113476035
Start: 3712586
End: 3713398
Strand: Reverse
Name: 113476035
Synonym: Tery_2405
Alternate gene names: NA
Gene position: 3713398-3712586 (Counterclockwise)
Preceding gene: 113476037
Following gene: 113476034
Centisome position: 47.91
GC content: 38.01
Gene sequence:
>813_bases ATGATCAAAACCAAAGCCAAAACCCTAAATTGGCTAGGTTCATTAGTAAATCTAGCAATTTCTATCATAGCTTTAACAGG TACGATCAGCTTGCAAGTACTCTGGCCACCAGAAGGTTCACCCTTAAAAGAAAAAATTATTTTAGACTCAACAGATGCAG CCTTAGCCGAACAAAAAGAAGCTTTGCAGTTTCAGCTTAAGCTATTGAAAACATCTCCCACTTTTGGGTTTGATAATTTA ATTGCAGATTGGGCATTCCTCCAGTTCATCCAATATTTCGGGGATGAGGTAGCCAGAAATCAAACAGGTTATTCCTTAAG CGAAGATTATTTTGATATCATCACCCATTTAGATCCCAAATGGGTTGATATATACCTATTCCTTTCCAACTCTTTATCTA TATATCAAGGTAAACCCAAAGTAGCTGTAGAATATATGACCCGTGGCACCGATGCACTTTCCCCACAAATAGATCCGGAA GCTTGGCAAGTATGGAGATTAAAAGGGATCGATCAATTATTATTAGTAGGTGATATTCCAGGGGCAATTCGTTCTCACGA AATGGCAGCAAAATGGACTGAGAATACATCATACCAAGAATTAAGCTCTCTGTTTAAAAACACAGCAGAATTTCTCAAGA CAGATCCAGATAGTAAATTAATCAAGTTCAACGCCTGGTTATGGGTATATTATCAAACACAAGACTCAAGGGTAAAAGAG CGCGCTCAACAAGAAATTATCGAACTTGGTGGGAAAGTGGAAATGAGTGAAAATGGAGAAAAGCTTTTTCTCTTGCCAGA ATCTTCAGATTAG
Upstream 100 bases:
>100_bases CAAATATTTAGACGTATGATATTTGTCAGGGTATAAAATTTACCTAATTTTGGGCTCAAAAATTTTAATAATTAATTTTA TTAACAGGAAAATTTGAGAA
Downstream 100 bases:
>100_bases AGGAAAATATTAAAATCAGATCTGGTAGCTTAATTTTAAGTAAGCCCCAAAGAACTTAACCTGCTTGACATGATAGAATT TCAAATATAGTCATTTCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKEALQFQLKLLKTSPTFGFDNL IADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPKWVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPE AWQVWRLKGIDQLLLVGDIPGAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE RAQQEIIELGGKVEMSENGEKLFLLPESSD
Sequences:
>Translated_270_residues MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKEALQFQLKLLKTSPTFGFDNL IADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPKWVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPE AWQVWRLKGIDQLLLVGDIPGAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE RAQQEIIELGGKVEMSENGEKLFLLPESSD >Mature_270_residues MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKEALQFQLKLLKTSPTFGFDNL IADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPKWVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPE AWQVWRLKGIDQLLLVGDIPGAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE RAQQEIIELGGKVEMSENGEKLFLLPESSD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30693; Mature: 30693
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKE CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHH ALQFQLKLLKTSPTFGFDNLIADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPK HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC WVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPEAWQVWRLKGIDQLLLVGDIP CEEEEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCC GAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE CHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCHHHHHH RAQQEIIELGGKVEMSENGEKLFLLPESSD HHHHHHHHCCCEEEECCCCCEEEEEECCCC >Mature Secondary Structure MIKTKAKTLNWLGSLVNLAISIIALTGTISLQVLWPPEGSPLKEKIILDSTDAALAEQKE CCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHH ALQFQLKLLKTSPTFGFDNLIADWAFLQFIQYFGDEVARNQTGYSLSEDYFDIITHLDPK HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC WVDIYLFLSNSLSIYQGKPKVAVEYMTRGTDALSPQIDPEAWQVWRLKGIDQLLLVGDIP CEEEEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCC GAIRSHEMAAKWTENTSYQELSSLFKNTAEFLKTDPDSKLIKFNAWLWVYYQTQDSRVKE CHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCHHHHHH RAQQEIIELGGKVEMSENGEKLFLLPESSD HHHHHHHHCCCEEEECCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA