Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113476034

Identifier: 113476034

GI number: 113476034

Start: 3711695

End: 3712375

Strand: Reverse

Name: 113476034

Synonym: Tery_2404

Alternate gene names: NA

Gene position: 3712375-3711695 (Counterclockwise)

Preceding gene: 113476035

Following gene: 113476031

Centisome position: 47.9

GC content: 37.15

Gene sequence:

>681_bases
GTGCACAAGAAAACTAAAAACATACTGCTGCTGATACTTTTGTCCATAGCTTCTTACACGTTAGTTTGCATAGTAGGGAA
TACTATTTCCCTAAACTCAGCAGCCAAAGCTCCCGTTGATGCTTACTTAGTTTTGGGTGGTAGTATTAAACGGGAAATTT
ATATTACTCAAGTGGCTAAACAATATCCTCATATACCTATACTCATTTCTGCTGGTTCTAAAGACCCCTGTATTGTGAAA
TTATTTCAACGGGAAAATGTTCCTTTAGATGGAGTTTGGTTAGAACATTGCGCTAAATCTACTTTTAGTAATTTCTTTTT
TACTATGCCAATTTTAGAAGAATGGGGAGTACAACATATTAAACTGGTGACATCTCCTAGTCATTTGCCCAGGGCAAAGT
GGTTGGCACAAATTATTTTGGGTACTCATGGAATTTGGGTAGAAACTGATATTGTTCAGGAAATAGGTATACCAGGAAAT
CAAGAATCTCCTCTCAAGACAGCAGTAGATGTAATTCGTAGTTTAATGTGGGCGTTAGCAAGTAAGGTAATAGAAGCAAA
ATGTACAGATGTGGTCAAACTCTCACAGGTAAATATGACACAATGGTGTCAGAAAGGTTTTCAGTGTGAACATCAAGCAC
AATTGAAACCAGAATCAATTTGTTATCCTAAGCCGAGGTAG

Upstream 100 bases:

>100_bases
ACAAAGCTTTATTTTTGTAAAAAAGTTTCAGGTCAAAAAGTGTTTTATTCAAAATTTGAAATGACTACAATTTATATGAG
AGAAAGTCAAATCATTTGTC

Downstream 100 bases:

>100_bases
TTCTTGAGAGATTGAATTTCACTTAAATTTAGGTCTCGCCACTCGCCAGGTTTTAGTCCCTCAAGACGAAGATTAGCGAT
CGCTATCCTAACTAACCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAKQYPHIPILISAGSKDPCIVK
LFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHIKLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGN
QESPLKTAVDVIRSLMWALASKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR

Sequences:

>Translated_226_residues
MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAKQYPHIPILISAGSKDPCIVK
LFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHIKLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGN
QESPLKTAVDVIRSLMWALASKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR
>Mature_226_residues
MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAKQYPHIPILISAGSKDPCIVK
LFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHIKLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGN
QESPLKTAVDVIRSLMWALASKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR

Specific function: Unknown

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25257; Mature: 25257

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAK
CCCCHHHHHHHHHHHHHHHEEEEEECCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHH
QYPHIPILISAGSKDPCIVKLFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHI
HCCCCEEEEECCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHEEECHHHHHCCCEEE
KLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGNQESPLKTAVDVIRSLMWALA
EEEECCCCCCHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
SKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR
HHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAK
CCCCHHHHHHHHHHHHHHHEEEEEECCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHH
QYPHIPILISAGSKDPCIVKLFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHI
HCCCCEEEEECCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHEEECHHHHHCCCEEE
KLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGNQESPLKTAVDVIRSLMWALA
EEEECCCCCCHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
SKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR
HHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA