Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113476034
Identifier: 113476034
GI number: 113476034
Start: 3711695
End: 3712375
Strand: Reverse
Name: 113476034
Synonym: Tery_2404
Alternate gene names: NA
Gene position: 3712375-3711695 (Counterclockwise)
Preceding gene: 113476035
Following gene: 113476031
Centisome position: 47.9
GC content: 37.15
Gene sequence:
>681_bases GTGCACAAGAAAACTAAAAACATACTGCTGCTGATACTTTTGTCCATAGCTTCTTACACGTTAGTTTGCATAGTAGGGAA TACTATTTCCCTAAACTCAGCAGCCAAAGCTCCCGTTGATGCTTACTTAGTTTTGGGTGGTAGTATTAAACGGGAAATTT ATATTACTCAAGTGGCTAAACAATATCCTCATATACCTATACTCATTTCTGCTGGTTCTAAAGACCCCTGTATTGTGAAA TTATTTCAACGGGAAAATGTTCCTTTAGATGGAGTTTGGTTAGAACATTGCGCTAAATCTACTTTTAGTAATTTCTTTTT TACTATGCCAATTTTAGAAGAATGGGGAGTACAACATATTAAACTGGTGACATCTCCTAGTCATTTGCCCAGGGCAAAGT GGTTGGCACAAATTATTTTGGGTACTCATGGAATTTGGGTAGAAACTGATATTGTTCAGGAAATAGGTATACCAGGAAAT CAAGAATCTCCTCTCAAGACAGCAGTAGATGTAATTCGTAGTTTAATGTGGGCGTTAGCAAGTAAGGTAATAGAAGCAAA ATGTACAGATGTGGTCAAACTCTCACAGGTAAATATGACACAATGGTGTCAGAAAGGTTTTCAGTGTGAACATCAAGCAC AATTGAAACCAGAATCAATTTGTTATCCTAAGCCGAGGTAG
Upstream 100 bases:
>100_bases ACAAAGCTTTATTTTTGTAAAAAAGTTTCAGGTCAAAAAGTGTTTTATTCAAAATTTGAAATGACTACAATTTATATGAG AGAAAGTCAAATCATTTGTC
Downstream 100 bases:
>100_bases TTCTTGAGAGATTGAATTTCACTTAAATTTAGGTCTCGCCACTCGCCAGGTTTTAGTCCCTCAAGACGAAGATTAGCGAT CGCTATCCTAACTAACCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 226; Mature: 226
Protein sequence:
>226_residues MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAKQYPHIPILISAGSKDPCIVK LFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHIKLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGN QESPLKTAVDVIRSLMWALASKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR
Sequences:
>Translated_226_residues MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAKQYPHIPILISAGSKDPCIVK LFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHIKLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGN QESPLKTAVDVIRSLMWALASKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR >Mature_226_residues MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAKQYPHIPILISAGSKDPCIVK LFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHIKLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGN QESPLKTAVDVIRSLMWALASKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR
Specific function: Unknown
COG id: COG1434
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25257; Mature: 25257
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAK CCCCHHHHHHHHHHHHHHHEEEEEECCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHH QYPHIPILISAGSKDPCIVKLFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHI HCCCCEEEEECCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHEEECHHHHHCCCEEE KLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGNQESPLKTAVDVIRSLMWALA EEEECCCCCCHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH SKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR HHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MHKKTKNILLLILLSIASYTLVCIVGNTISLNSAAKAPVDAYLVLGGSIKREIYITQVAK CCCCHHHHHHHHHHHHHHHEEEEEECCEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHH QYPHIPILISAGSKDPCIVKLFQRENVPLDGVWLEHCAKSTFSNFFFTMPILEEWGVQHI HCCCCEEEEECCCCCCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHEEECHHHHHCCCEEE KLVTSPSHLPRAKWLAQIILGTHGIWVETDIVQEIGIPGNQESPLKTAVDVIRSLMWALA EEEECCCCCCHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH SKVIEAKCTDVVKLSQVNMTQWCQKGFQCEHQAQLKPESICYPKPR HHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA