Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113475985
Identifier: 113475985
GI number: 113475985
Start: 3635609
End: 3637234
Strand: Reverse
Name: 113475985
Synonym: Tery_2353
Alternate gene names: NA
Gene position: 3637234-3635609 (Counterclockwise)
Preceding gene: 113475987
Following gene: 113475984
Centisome position: 46.93
GC content: 41.27
Gene sequence:
>1626_bases ATGCTAGAAAGTATTATTTGGATATTATTAACTGGCTTTTTTGTCGGTGAAATTGCCTTGAGGTTAAAAGCACCACCCCT AATAGGAATGCTATTAGTGGGAATATTATTAGGTCCTCAAATTAGCAATACTATCGACTCTAGCATTTTGGAAGCTGCCG ACTCTCTGCGCACCTTTGCTGTAACAATAATTTTAATGAAAGCAGGCTTAGGTCTAGACAGAGAAAAATTAGCACAACAA GGTAGTGTAGCACTGCGCCTAGGTTTTCTCCCAGCAACCTGTGAAGCTATTGTTATTGCCCTAGCCGCTATGTGGTTACT TAATTTTGACTTTGCTACCGGGTTGTTATTAGGCTGTATCATCGGTGCCGAGTCTCCTGCAGTTATTGTTCCTGGAATGT TGCGGCTCAAAAGTTTGGGTTGGGGCGTGACTAAAGGTATTCCTGATGCAATTTTAACTGGTAGTGCTTTGTCAGATGTT TTGCTGTTGTTAATTTTTAGTTTACTACTGGCATTTTTATCCCAGGGAACAACTATTGGCATAACTTTACCTGGTGGCAT CACTATAAACTTATTACAAATATTACCCTTTCAGGTTACTCTGCAAATAATTTTGGGAGCGATCGCTGGGTTGCTGATGG CGCAAATATTAGTATTATTATTAGTCAAACAAAATTGGACTCAAAATTCTACCCAAGATACTTTAGTTGCTGGAAGCCTG ACCCTCTTATTAGTAGTCTTAGCAGAAAAATTCCCCATATTCTCTGGTTATTTGGCAGTCATGGCAACAGGATTTTTTGT GCTCGAATTTGATCCTCCCCTGGGGCGACGCTTAAGAAATGGTTTTGAGACCTTGTGGACGATAGCGCAAATAATTTTGT TTGTTTTGCTCGGTGCTAGTATCCCCTTGCAAGTCCTAGAAAATGTCTTCTTAGTGGGGTTATTAATTTTAGCTCTGGGT ACTTTTGTCGGGCGGATGTTTGGTTGGTATCTCTCGACCTTGGGCAGTAATTGGAATTTGCAAGAACGTCTATTTTTACT ACCTGGAAATTCTGCAAAAGCAACTGTGCAGGCTGCTATTGGTGCTATTCCTCTAGCGGTAGGCATTGAGGGAGGAGAAA CAATTTTAGCGATCGCCGCCCTTTCCATATTAGTCACAGCACCTTTGGGAGCTTGGGCAATACCTGCCTTAGCACCAAAA CTGTTAGAAAAAGGAGAAGTCGATCCGACAAAAGTAGCGATCGCTCGTCCTATTATATTATTAGCCGCCGTTGATACCTC ACCTCTTGCCGTTGATGTGTTATTAAAAGCTGCAGAACTGGCGAGGCGTTGTGACGGGGAAATTGTAGTCTTGCACGTTC TTCAATTTGAATACCGCAACAGTATTGAGCAACTGCGACAGCAAACTAGGCAACTTTTGGCAGATATTCGGCATCAGTTT ATAACTGTTGCGGGTGATGCTTCAGAAGAAATAATTTTTATAGCGCAAGAGTATGGAGCAGCAGAAATTGTCATAGGAAA AAAGGGGGATCGTTTATGGGACAATGTGTTAGTTGGGTCAGTTTCTCAAGCAGTTTTAGAAAAGAGTTTAATTCCTGTAG TGGTAGTTGAAAAAATAAAAACATAG
Upstream 100 bases:
>100_bases TATTTTTACCTGATAAAAAAACAACAAAAAACTTAAAATTGTTAGTTTTAACAATAGCTTATTCCAACCTATTATTAGAT TAATTATTAATTCTTAAACT
Downstream 100 bases:
>100_bases TTGTATATAGAAACAAAAAATAAGTCATTTTCAGAATGGAATAGTTAAGCATAAATTGTTTAATTACTTGTGATGATGAA ATAATTAAGATATGATGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Na(+)/H(+) Antiporter; Transporter CPA2 Family; Na+/H+ Antiporter; Sodium/Proton Antiporter CPA1 Family; Na+/H+-Exchanging Protein; Sodium/Hydrogen Antiporter; Sodium/Hydrogen Exchanger Family Protein; Na+/H+-Exchanging ProteinNa+/H+ Antiporter; Monovalent CationProton Antiporter-2 Family Protein; Transporter Monovalent CationProton Antiporter-2 Family; Sodium/Hydrogen Exchanger/Universal Stress Family Protein
Number of amino acids: Translated: 541; Mature: 541
Protein sequence:
>541_residues MLESIIWILLTGFFVGEIALRLKAPPLIGMLLVGILLGPQISNTIDSSILEAADSLRTFAVTIILMKAGLGLDREKLAQQ GSVALRLGFLPATCEAIVIALAAMWLLNFDFATGLLLGCIIGAESPAVIVPGMLRLKSLGWGVTKGIPDAILTGSALSDV LLLLIFSLLLAFLSQGTTIGITLPGGITINLLQILPFQVTLQIILGAIAGLLMAQILVLLLVKQNWTQNSTQDTLVAGSL TLLLVVLAEKFPIFSGYLAVMATGFFVLEFDPPLGRRLRNGFETLWTIAQIILFVLLGASIPLQVLENVFLVGLLILALG TFVGRMFGWYLSTLGSNWNLQERLFLLPGNSAKATVQAAIGAIPLAVGIEGGETILAIAALSILVTAPLGAWAIPALAPK LLEKGEVDPTKVAIARPIILLAAVDTSPLAVDVLLKAAELARRCDGEIVVLHVLQFEYRNSIEQLRQQTRQLLADIRHQF ITVAGDASEEIIFIAQEYGAAEIVIGKKGDRLWDNVLVGSVSQAVLEKSLIPVVVVEKIKT
Sequences:
>Translated_541_residues MLESIIWILLTGFFVGEIALRLKAPPLIGMLLVGILLGPQISNTIDSSILEAADSLRTFAVTIILMKAGLGLDREKLAQQ GSVALRLGFLPATCEAIVIALAAMWLLNFDFATGLLLGCIIGAESPAVIVPGMLRLKSLGWGVTKGIPDAILTGSALSDV LLLLIFSLLLAFLSQGTTIGITLPGGITINLLQILPFQVTLQIILGAIAGLLMAQILVLLLVKQNWTQNSTQDTLVAGSL TLLLVVLAEKFPIFSGYLAVMATGFFVLEFDPPLGRRLRNGFETLWTIAQIILFVLLGASIPLQVLENVFLVGLLILALG TFVGRMFGWYLSTLGSNWNLQERLFLLPGNSAKATVQAAIGAIPLAVGIEGGETILAIAALSILVTAPLGAWAIPALAPK LLEKGEVDPTKVAIARPIILLAAVDTSPLAVDVLLKAAELARRCDGEIVVLHVLQFEYRNSIEQLRQQTRQLLADIRHQF ITVAGDASEEIIFIAQEYGAAEIVIGKKGDRLWDNVLVGSVSQAVLEKSLIPVVVVEKIKT >Mature_541_residues MLESIIWILLTGFFVGEIALRLKAPPLIGMLLVGILLGPQISNTIDSSILEAADSLRTFAVTIILMKAGLGLDREKLAQQ GSVALRLGFLPATCEAIVIALAAMWLLNFDFATGLLLGCIIGAESPAVIVPGMLRLKSLGWGVTKGIPDAILTGSALSDV LLLLIFSLLLAFLSQGTTIGITLPGGITINLLQILPFQVTLQIILGAIAGLLMAQILVLLLVKQNWTQNSTQDTLVAGSL TLLLVVLAEKFPIFSGYLAVMATGFFVLEFDPPLGRRLRNGFETLWTIAQIILFVLLGASIPLQVLENVFLVGLLILALG TFVGRMFGWYLSTLGSNWNLQERLFLLPGNSAKATVQAAIGAIPLAVGIEGGETILAIAALSILVTAPLGAWAIPALAPK LLEKGEVDPTKVAIARPIILLAAVDTSPLAVDVLLKAAELARRCDGEIVVLHVLQFEYRNSIEQLRQQTRQLLADIRHQF ITVAGDASEEIIFIAQEYGAAEIVIGKKGDRLWDNVLVGSVSQAVLEKSLIPVVVVEKIKT
Specific function: Unknown
COG id: COG0025
COG function: function code P; NhaP-type Na+/H+ and K+/H+ antiporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI47271479, Length=371, Percent_Identity=32.6145552560647, Blast_Score=137, Evalue=3e-32, Organism=Homo sapiens, GI66793392, Length=372, Percent_Identity=29.8387096774194, Blast_Score=123, Evalue=4e-28, Organism=Homo sapiens, GI154937338, Length=308, Percent_Identity=29.2207792207792, Blast_Score=99, Evalue=1e-20, Organism=Caenorhabditis elegans, GI25152227, Length=407, Percent_Identity=25.7985257985258, Blast_Score=92, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17567635, Length=414, Percent_Identity=25.1207729468599, Blast_Score=82, Evalue=9e-16, Organism=Caenorhabditis elegans, GI32566724, Length=181, Percent_Identity=26.5193370165746, Blast_Score=66, Evalue=5e-11, Organism=Drosophila melanogaster, GI20129297, Length=406, Percent_Identity=31.5270935960591, Blast_Score=125, Evalue=8e-29, Organism=Drosophila melanogaster, GI45550940, Length=406, Percent_Identity=31.5270935960591, Blast_Score=125, Evalue=9e-29, Organism=Drosophila melanogaster, GI24649169, Length=429, Percent_Identity=27.7389277389277, Blast_Score=96, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57782; Mature: 57782
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: PS00589 PTS_HPR_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLESIIWILLTGFFVGEIALRLKAPPLIGMLLVGILLGPQISNTIDSSILEAADSLRTFA CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VTIILMKAGLGLDREKLAQQGSVALRLGFLPATCEAIVIALAAMWLLNFDFATGLLLGCI HHHHHHHHCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGAESPAVIVPGMLRLKSLGWGVTKGIPDAILTGSALSDVLLLLIFSLLLAFLSQGTTIG HCCCCCCEECCHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEE ITLPGGITINLLQILPFQVTLQIILGAIAGLLMAQILVLLLVKQNWTQNSTQDTLVAGSL EEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH TLLLVVLAEKFPIFSGYLAVMATGFFVLEFDPPLGRRLRNGFETLWTIAQIILFVLLGAS HHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC IPLQVLENVFLVGLLILALGTFVGRMFGWYLSTLGSNWNLQERLFLLPGNSAKATVQAAI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH GAIPLAVGIEGGETILAIAALSILVTAPLGAWAIPALAPKLLEKGEVDPTKVAIARPIIL CCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCEEE LAAVDTSPLAVDVLLKAAELARRCDGEIVVLHVLQFEYRNSIEQLRQQTRQLLADIRHQF EEECCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE ITVAGDASEEIIFIAQEYGAAEIVIGKKGDRLWDNVLVGSVSQAVLEKSLIPVVVVEKIK EEEECCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC T C >Mature Secondary Structure MLESIIWILLTGFFVGEIALRLKAPPLIGMLLVGILLGPQISNTIDSSILEAADSLRTFA CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH VTIILMKAGLGLDREKLAQQGSVALRLGFLPATCEAIVIALAAMWLLNFDFATGLLLGCI HHHHHHHHCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGAESPAVIVPGMLRLKSLGWGVTKGIPDAILTGSALSDVLLLLIFSLLLAFLSQGTTIG HCCCCCCEECCHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEE ITLPGGITINLLQILPFQVTLQIILGAIAGLLMAQILVLLLVKQNWTQNSTQDTLVAGSL EEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH TLLLVVLAEKFPIFSGYLAVMATGFFVLEFDPPLGRRLRNGFETLWTIAQIILFVLLGAS HHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC IPLQVLENVFLVGLLILALGTFVGRMFGWYLSTLGSNWNLQERLFLLPGNSAKATVQAAI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH GAIPLAVGIEGGETILAIAALSILVTAPLGAWAIPALAPKLLEKGEVDPTKVAIARPIIL CCCEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCEEE LAAVDTSPLAVDVLLKAAELARRCDGEIVVLHVLQFEYRNSIEQLRQQTRQLLADIRHQF EEECCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE ITVAGDASEEIIFIAQEYGAAEIVIGKKGDRLWDNVLVGSVSQAVLEKSLIPVVVVEKIK EEEECCCCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC T C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA