Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113475984
Identifier: 113475984
GI number: 113475984
Start: 3633780
End: 3635186
Strand: Reverse
Name: 113475984
Synonym: Tery_2352
Alternate gene names: NA
Gene position: 3635186-3633780 (Counterclockwise)
Preceding gene: 113475985
Following gene: 113475983
Centisome position: 46.9
GC content: 39.52
Gene sequence:
>1407_bases TTGATTGAAAAGAATAAATATTCACCCCCTTCCATAACCACTATTTCTCGTCAAGAACTACGGGAATTAGTTCGATCGCA GCTTCAAACTCTACTAGAACAAGATAATTTGTCTGGAGCCAAAGCTCTTTTAGTACCAGTACAACCAGCCGATATTGCTG AAGCGATCGAAGGTTTACCAGAAACTATGCAAGTCATTGCTTTTCGGTTACTGCCTAAAGTAGAAGCGATCGAAGTTTAT GAACAACTAGGCTCTACTGTACAACAGTCTTTATGTGAAAAGTTTAAGCGCCAAGAAGTCATAGATATTGTTGATAAAAT GTCCCCTGATGATCGTGTCAAACTCTTTGAAGAACTTCCAGCAGCTGTTGTCCGACGTTTATTAGGTCAACTCAGTCCTA CTGAACGCCAAGCTACCGCCCAACTCCTGGGTTATGACTCCGGAACAGCAGGGCGGATAATGACTCCAGAATACATCTCC CTTAAAGAAGAATATACCGTTGCCGAAAGTTTAGAACGTATTCGTTCACTAGCTAATGTTACCGAGACAGTTTATTCTCT ATATGTCACTGACACTAACCGTTATCTTACAGGTATTTTATCACTTCGAGACTTAGTTACCTCTCAGCTCAACCAAACTA TTGGGGAAATAATGAGTCGTGACTTTGTCTCGGTGCAAACTGGTACTGACCAAGAAGAAGTTGTCCGTGTTATTCAGCGT TATGATTTTTTAGCAATACCAGTAGTTGACAGTGAACAAAGACTTGTGGGCATTATTACCGTTGATGATGTTCTTGATAT TTTGGAACAGGAAACTACTGAAGATATTTATGCTTTAGGTGGGGTGCAGTCTGATGGTGATAATTATTTCCAGGTGAATT TATTTACTGTTGCTCGTAGAAGGGTAGTTTGGTTATTTGTTTTACTACTGACAAATAGTGTTACAGGTGGAATTATTACA GCACAAGAAGATATTCTGAAAAAGGTAGTTACTTTGGCAGCATTTATTCCATTATTAACTGGTACTGGTGGAAATGTGGG GGCGCAGTCTTCAACTGTTGTCATTCGGGGTATGAATACTGATGAAATCTGGAAAATTGGAATTCTGAAAGTCATTATCC GTGAAGCTTGTGCTGGTGCCATGCTTGGAAGTATTCTCGGTTTATTGGCAACAGCTTGGGCATACTTATTTATTGTTAAT GGAAATTTAGAAGTCTCAGTGACCGTAGGAATAAGTTTAGTCGCTATCTCAACTTTGGCTTCTATTGCTGGCTCTGCTTT GCCATTTTTGTTTCGCTCATTTGGGTTAGACCCAGCATTAATGTCAGCACCTTTTATTACAACTGCTGTGGATGTTCTCG GTGTTTTAATTTATTTCAACTTGGCACGAATGATTCTACAAATATGA
Upstream 100 bases:
>100_bases CACACCCTAAAAACTAGGACTTTATTGACTCTAAGGGAAAAAAAAATTTCCCTTAGCTTCTAAACTGAACTCAGGAACAT ATCTCATAGGAGGGCTAACT
Downstream 100 bases:
>100_bases AAAAAACCTCAAGGTGGGTTATGATTTATGATCATAAGTACTCACCTTTTATTATTCATAGATAGTAGCTTTTGTCTAAT TTTATATCCTGAAAATCTGT
Product: magnesium transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MIEKNKYSPPSITTISRQELRELVRSQLQTLLEQDNLSGAKALLVPVQPADIAEAIEGLPETMQVIAFRLLPKVEAIEVY EQLGSTVQQSLCEKFKRQEVIDIVDKMSPDDRVKLFEELPAAVVRRLLGQLSPTERQATAQLLGYDSGTAGRIMTPEYIS LKEEYTVAESLERIRSLANVTETVYSLYVTDTNRYLTGILSLRDLVTSQLNQTIGEIMSRDFVSVQTGTDQEEVVRVIQR YDFLAIPVVDSEQRLVGIITVDDVLDILEQETTEDIYALGGVQSDGDNYFQVNLFTVARRRVVWLFVLLLTNSVTGGIIT AQEDILKKVVTLAAFIPLLTGTGGNVGAQSSTVVIRGMNTDEIWKIGILKVIIREACAGAMLGSILGLLATAWAYLFIVN GNLEVSVTVGISLVAISTLASIAGSALPFLFRSFGLDPALMSAPFITTAVDVLGVLIYFNLARMILQI
Sequences:
>Translated_468_residues MIEKNKYSPPSITTISRQELRELVRSQLQTLLEQDNLSGAKALLVPVQPADIAEAIEGLPETMQVIAFRLLPKVEAIEVY EQLGSTVQQSLCEKFKRQEVIDIVDKMSPDDRVKLFEELPAAVVRRLLGQLSPTERQATAQLLGYDSGTAGRIMTPEYIS LKEEYTVAESLERIRSLANVTETVYSLYVTDTNRYLTGILSLRDLVTSQLNQTIGEIMSRDFVSVQTGTDQEEVVRVIQR YDFLAIPVVDSEQRLVGIITVDDVLDILEQETTEDIYALGGVQSDGDNYFQVNLFTVARRRVVWLFVLLLTNSVTGGIIT AQEDILKKVVTLAAFIPLLTGTGGNVGAQSSTVVIRGMNTDEIWKIGILKVIIREACAGAMLGSILGLLATAWAYLFIVN GNLEVSVTVGISLVAISTLASIAGSALPFLFRSFGLDPALMSAPFITTAVDVLGVLIYFNLARMILQI >Mature_468_residues MIEKNKYSPPSITTISRQELRELVRSQLQTLLEQDNLSGAKALLVPVQPADIAEAIEGLPETMQVIAFRLLPKVEAIEVY EQLGSTVQQSLCEKFKRQEVIDIVDKMSPDDRVKLFEELPAAVVRRLLGQLSPTERQATAQLLGYDSGTAGRIMTPEYIS LKEEYTVAESLERIRSLANVTETVYSLYVTDTNRYLTGILSLRDLVTSQLNQTIGEIMSRDFVSVQTGTDQEEVVRVIQR YDFLAIPVVDSEQRLVGIITVDDVLDILEQETTEDIYALGGVQSDGDNYFQVNLFTVARRRVVWLFVLLLTNSVTGGIIT AQEDILKKVVTLAAFIPLLTGTGGNVGAQSSTVVIRGMNTDEIWKIGILKVIIREACAGAMLGSILGLLATAWAYLFIVN GNLEVSVTVGISLVAISTLASIAGSALPFLFRSFGLDPALMSAPFITTAVDVLGVLIYFNLARMILQI
Specific function: Acts as a magnesium transporter [H]
COG id: COG2239
COG function: function code P; Mg/Co/Ni transporter MgtE (contains CBS domain)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 - InterPro: IPR006668 - InterPro: IPR006667 - InterPro: IPR006669 [H]
Pfam domain/function: PF00571 CBS; PF01769 MgtE; PF03448 MgtE_N [H]
EC number: NA
Molecular weight: Translated: 51399; Mature: 51399
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: PS00421 TM4_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEKNKYSPPSITTISRQELRELVRSQLQTLLEQDNLSGAKALLVPVQPADIAEAIEGLP CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCH ETMQVIAFRLLPKVEAIEVYEQLGSTVQQSLCEKFKRQEVIDIVDKMSPDDRVKLFEELP HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AAVVRRLLGQLSPTERQATAQLLGYDSGTAGRIMTPEYISLKEEYTVAESLERIRSLANV HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TETVYSLYVTDTNRYLTGILSLRDLVTSQLNQTIGEIMSRDFVSVQTGTDQEEVVRVIQR HHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH YDFLAIPVVDSEQRLVGIITVDDVLDILEQETTEDIYALGGVQSDGDNYFQVNLFTVARR CCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHH RVVWLFVLLLTNSVTGGIITAQEDILKKVVTLAAFIPLLTGTGGNVGAQSSTVVIRGMNT HHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC DEIWKIGILKVIIREACAGAMLGSILGLLATAWAYLFIVNGNLEVSVTVGISLVAISTLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECHHHHHHHHHH SIAGSALPFLFRSFGLDPALMSAPFITTAVDVLGVLIYFNLARMILQI HHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIEKNKYSPPSITTISRQELRELVRSQLQTLLEQDNLSGAKALLVPVQPADIAEAIEGLP CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCH ETMQVIAFRLLPKVEAIEVYEQLGSTVQQSLCEKFKRQEVIDIVDKMSPDDRVKLFEELP HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH AAVVRRLLGQLSPTERQATAQLLGYDSGTAGRIMTPEYISLKEEYTVAESLERIRSLANV HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH TETVYSLYVTDTNRYLTGILSLRDLVTSQLNQTIGEIMSRDFVSVQTGTDQEEVVRVIQR HHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH YDFLAIPVVDSEQRLVGIITVDDVLDILEQETTEDIYALGGVQSDGDNYFQVNLFTVARR CCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHH RVVWLFVLLLTNSVTGGIITAQEDILKKVVTLAAFIPLLTGTGGNVGAQSSTVVIRGMNT HHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC DEIWKIGILKVIIREACAGAMLGSILGLLATAWAYLFIVNGNLEVSVTVGISLVAISTLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEEECHHHHHHHHHH SIAGSALPFLFRSFGLDPALMSAPFITTAVDVLGVLIYFNLARMILQI HHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA