| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475877
Identifier: 113475877
GI number: 113475877
Start: 3481790
End: 3483193
Strand: Reverse
Name: 113475877
Synonym: Tery_2236
Alternate gene names: NA
Gene position: 3483193-3481790 (Counterclockwise)
Preceding gene: 113475878
Following gene: 113475876
Centisome position: 44.94
GC content: 31.2
Gene sequence:
>1404_bases ATGACGATGAATCAATGTTTTTGTAATGTTATTGTTTCTAATGAAAATACGGTTAAACTCATAAAATTAACTCCTCAGTT AGCTACTAAAGAGCAGTTAATAGGTAAGTTAAATCTTGACAAAATTAACGATAAGATTAGAGAAATTATTAAAGCTCCTA CTAATTTGAAAGGTGAACAAATTACTAAGGTGGGAGAAGCTTTGTTTGAGGCTTTGTTTGATGCTCAGTTAAGAGAATAT TTTTTGGCATACTATCAAGATATTCTCAAACAACAGGATGCAAATTTGGGAATTATTTTAGAAATAAATGAGGAAGCTAT GCCGGAAGTTGTAGCTTATCCTTGGGAGTTAATGTGTTTACCTGAGAAATATAATCAAGGTCAAATTTATTTCGCTACTA ATCGTAAATTAAGTTTTTACCGTCGTAGATATCAATTAGAAGAATCAAATAAATTATCTATTAAAATTAATCAGGATGAA CAGTTAAAAATTGCTTTAGTTGTCTCGAAACCGACGGCTGATTCTGGATTAAGTGATGTGGAATATTATGAGGTACATAA ATACTTAAAAAGTATAGATACTAAACAGGAGCAAGTTAAATTTTTACCTGTTATGAATTCTCTAGATTTCTATAGTATTG TAGAAAGATTAGAAACTGAGAAACCGGATATTTTTCATTTTATTGGTCACGGTCAATTAGTTGAGAAAAATGGAGAAGAT TTAGGACAGGTTGCTTTTGTTAATGAGTTTGGTGAAGCTGATTGGAAAGATGCTAAAATGTTTTGTCAATTGTTTACTGG TCATCAACCTAAAGTTGTGATTTTACAAGCTTGTGAAACTGGAAAACAATCTGAAACTAATGCTTTTAGTAGTCTGGCTT CTCGCTTAATGCTTGAGGGAATTCCGGTGGTTATAGCTATGCAATATAAGGTTTCTAATCAAACGGCGATTATTTTTGTG AAGGAGTTTTATTCAAAAATAATAGATGGTAATTCTGTTGAGATGGCGGTACAGAAGGCTCGGTTTAAGTTGCGTATTGA GAAGGGTTATGAGGCAAGAGATTTTGCAATTCCTGTTGTGTTTATGAATGCTTTAGATGGTTATTTATTTGCCAAAGAAT CTATGGAGATAACTCAGAAAAAAAATGGTTTCTTGAGTTTAACGGGGGAACAAAGAAGAAAATTTCGTGAAGAGATTGAA AGGGTATTAAGTGAGGATAAACTGACAAGTATATTTTCTGAATATCCAGAGAAATTTGGAGATAATTTTTATAATCAAAT TCCAGGAGGTGACTATCGTACAAGGTTGATTAATTTAATCATTGAGCTAAATAATAGAGAACTTATTTTTGATTTTATTA AAGTTGTTAGGTATGAGTATCATAATTTTGCTCAAGATTTATAA
Upstream 100 bases:
>100_bases TTTGCGGTTGGGATAAAGGAAGAATGGACTAGTCAGTGGGAAAAACAAATTAGCTTACCAAAACTGTAGATTATTTACTT TTTGATTGTTCTTAATTTTT
Downstream 100 bases:
>100_bases ATAGTAGATAAAATAGTAATGTAAGTACATTGCAAATGAAATTTACTGATAAGCAAAGAATCAAATTTCGTGAAGAGATT GAAAGGGTATTAAGTGAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MTMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQITKVGEALFEALFDAQLREY FLAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCLPEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDE QLKIALVVSKPTADSGLSDVEYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGED LGQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEGIPVVIAMQYKVSNQTAIIFV KEFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVVFMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIE RVLSEDKLTSIFSEYPEKFGDNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL
Sequences:
>Translated_467_residues MTMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQITKVGEALFEALFDAQLREY FLAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCLPEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDE QLKIALVVSKPTADSGLSDVEYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGED LGQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEGIPVVIAMQYKVSNQTAIIFV KEFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVVFMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIE RVLSEDKLTSIFSEYPEKFGDNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL >Mature_466_residues TMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQITKVGEALFEALFDAQLREYF LAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCLPEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDEQ LKIALVVSKPTADSGLSDVEYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGEDL GQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEGIPVVIAMQYKVSNQTAIIFVK EFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVVFMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIER VLSEDKLTSIFSEYPEKFGDNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54147; Mature: 54016
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQ CCCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH ITKVGEALFEALFDAQLREYFLAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCHHHCCCEEEEEE PEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDEQLKIALVVSKPTADSGLSDV CCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCH EYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGED HHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCEEEECCCCC LGQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEG HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC IPVVIAMQYKVSNQTAIIFVKEFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVV CCEEEEEEEEECCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCHHEEHHH FMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIERVLSEDKLTSIFSEYPEKFG HHHHHCCCEEECCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL CHHHHCCCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TMNQCFCNVIVSNENTVKLIKLTPQLATKEQLIGKLNLDKINDKIREIIKAPTNLKGEQ CCCCEEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH ITKVGEALFEALFDAQLREYFLAYYQDILKQQDANLGIILEINEEAMPEVVAYPWELMCL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCHHHCCCEEEEEE PEKYNQGQIYFATNRKLSFYRRRYQLEESNKLSIKINQDEQLKIALVVSKPTADSGLSDV CCCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCH EYYEVHKYLKSIDTKQEQVKFLPVMNSLDFYSIVERLETEKPDIFHFIGHGQLVEKNGED HHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCEEEECCCCC LGQVAFVNEFGEADWKDAKMFCQLFTGHQPKVVILQACETGKQSETNAFSSLASRLMLEG HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC IPVVIAMQYKVSNQTAIIFVKEFYSKIIDGNSVEMAVQKARFKLRIEKGYEARDFAIPVV CCEEEEEEEEECCCEEEEEHHHHHHHHHCCCHHHHHHHHHHHEEEEECCCCCCHHEEHHH FMNALDGYLFAKESMEITQKKNGFLSLTGEQRRKFREEIERVLSEDKLTSIFSEYPEKFG HHHHHCCCEEECCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC DNFYNQIPGGDYRTRLINLIIELNNRELIFDFIKVVRYEYHNFAQDL CHHHHCCCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA