| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475878
Identifier: 113475878
GI number: 113475878
Start: 3483225
End: 3484160
Strand: Reverse
Name: 113475878
Synonym: Tery_2237
Alternate gene names: NA
Gene position: 3484160-3483225 (Counterclockwise)
Preceding gene: 113475879
Following gene: 113475877
Centisome position: 44.96
GC content: 32.91
Gene sequence:
>936_bases ATGACAAATCAGAAATTGAATCTACCTAATTTTGAGAAGGCAGAAGATTTACTTAATGATTTATTTGAAAAAGTAAAAAG CCAGGAAAATGAGTTAGGGGGAGGGGAAGCTCAAGAGTTAAAAAGAGGAGCAACTGCGGTTAAAAGATTGAAGGAAACTA CTGTTACTTTTGGTAATCCTGATAGTAGATTAATTCCTCTTACTGCAAAAGGTTTTGAAGCAGAAGGAATAGAGTTAAAT TACGAAGTTAAACAGTTAATGAAGCGGTTTGATTTCTATTCTATGGTTGTGAGTATTGATCTAAGACCTCAACCAAGTGT TTTAATTTCAAAGTTAGAATGTCGGCTTGATTTTGGTGCTCAAGGAAAAGAGGAGCCAATAGTTCATCGTATTATTCCAG ATAGTAAATGGCAAACAATATTAAGTGCAGGAGTTAACTTTAATTTAGGATTAGATGCTAACTTGGATGTGGGAGTTGGA GGTGATAGTTCTGAGTTAATGAAAATAGCTAATCTTCCTAATTATGATCAATTAAAAGTTGATTTAAGAGCTAAAAATAA ATTTAAAACTTTTATTGTTTTTGATAGTTTAAATTATCGATTTGGTAAGTTTAATATCTCTGCTCATGGGGAAAATAATT CTTGGTGTGAATGGCGGCTTGAAAAACCAGAAATTCAGGATAAGTCTACTGTAGAATTTAGCGTTATTTTTAAGGTTCCT AAGGGATGGGAGTTTATTGATTTAATTGGTCATGCTTGGATTGAACCTAACATTGATTGGTTGAATGGTGAATTAACTCA TGTAATATCAAGTTTACCAGGTCATTTAAAAAATTTGTTTGGGAGTAAAGATAAAGCAGCTAAGAGTTTTGCGGTTGGGA TAAAGGAAGAATGGACTAGTCAGTGGGAAAAACAAATTAGCTTACCAAAACTGTAG
Upstream 100 bases:
>100_bases ATAATTAATGAGAAAGTCTTTTAAACATATTGTTAAATCTTAGTTTTTGGAGACGTCTAAGTCAAACCTTATTTCCTAAA AAGTATTTCCCAAAAAATTA
Downstream 100 bases:
>100_bases ATTATTTACTTTTTGATTGTTCTTAATTTTTATGACGATGAATCAATGTTTTTGTAATGTTATTGTTTCTAATGAAAATA CGGTTAAACTCATAAAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MTNQKLNLPNFEKAEDLLNDLFEKVKSQENELGGGEAQELKRGATAVKRLKETTVTFGNPDSRLIPLTAKGFEAEGIELN YEVKQLMKRFDFYSMVVSIDLRPQPSVLISKLECRLDFGAQGKEEPIVHRIIPDSKWQTILSAGVNFNLGLDANLDVGVG GDSSELMKIANLPNYDQLKVDLRAKNKFKTFIVFDSLNYRFGKFNISAHGENNSWCEWRLEKPEIQDKSTVEFSVIFKVP KGWEFIDLIGHAWIEPNIDWLNGELTHVISSLPGHLKNLFGSKDKAAKSFAVGIKEEWTSQWEKQISLPKL
Sequences:
>Translated_311_residues MTNQKLNLPNFEKAEDLLNDLFEKVKSQENELGGGEAQELKRGATAVKRLKETTVTFGNPDSRLIPLTAKGFEAEGIELN YEVKQLMKRFDFYSMVVSIDLRPQPSVLISKLECRLDFGAQGKEEPIVHRIIPDSKWQTILSAGVNFNLGLDANLDVGVG GDSSELMKIANLPNYDQLKVDLRAKNKFKTFIVFDSLNYRFGKFNISAHGENNSWCEWRLEKPEIQDKSTVEFSVIFKVP KGWEFIDLIGHAWIEPNIDWLNGELTHVISSLPGHLKNLFGSKDKAAKSFAVGIKEEWTSQWEKQISLPKL >Mature_310_residues TNQKLNLPNFEKAEDLLNDLFEKVKSQENELGGGEAQELKRGATAVKRLKETTVTFGNPDSRLIPLTAKGFEAEGIELNY EVKQLMKRFDFYSMVVSIDLRPQPSVLISKLECRLDFGAQGKEEPIVHRIIPDSKWQTILSAGVNFNLGLDANLDVGVGG DSSELMKIANLPNYDQLKVDLRAKNKFKTFIVFDSLNYRFGKFNISAHGENNSWCEWRLEKPEIQDKSTVEFSVIFKVPK GWEFIDLIGHAWIEPNIDWLNGELTHVISSLPGHLKNLFGSKDKAAKSFAVGIKEEWTSQWEKQISLPKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35259; Mature: 35127
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNQKLNLPNFEKAEDLLNDLFEKVKSQENELGGGEAQELKRGATAVKRLKETTVTFGNP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEECCC DSRLIPLTAKGFEAEGIELNYEVKQLMKRFDFYSMVVSIDLRPQPSVLISKLECRLDFGA CCEEEEEEECCCCCCCEEECHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHEEECCCC QGKEEPIVHRIIPDSKWQTILSAGVNFNLGLDANLDVGVGGDSSELMKIANLPNYDQLKV CCCCCCEEEECCCCHHHHHHHHCCCCEEECCCCCCEEECCCCHHHHHHHHCCCCCCCEEE DLRAKNKFKTFIVFDSLNYRFGKFNISAHGENNSWCEWRLEKPEIQDKSTVEFSVIFKVP EEEECCCEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECC KGWEFIDLIGHAWIEPNIDWLNGELTHVISSLPGHLKNLFGSKDKAAKSFAVGIKEEWTS CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCHHHHHHHCCHHHHHHH QWEKQISLPKL HHHHHCCCCCC >Mature Secondary Structure TNQKLNLPNFEKAEDLLNDLFEKVKSQENELGGGEAQELKRGATAVKRLKETTVTFGNP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEECCC DSRLIPLTAKGFEAEGIELNYEVKQLMKRFDFYSMVVSIDLRPQPSVLISKLECRLDFGA CCEEEEEEECCCCCCCEEECHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHEEECCCC QGKEEPIVHRIIPDSKWQTILSAGVNFNLGLDANLDVGVGGDSSELMKIANLPNYDQLKV CCCCCCEEEECCCCHHHHHHHHCCCCEEECCCCCCEEECCCCHHHHHHHHCCCCCCCEEE DLRAKNKFKTFIVFDSLNYRFGKFNISAHGENNSWCEWRLEKPEIQDKSTVEFSVIFKVP EEEECCCEEEEEEEECCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECC KGWEFIDLIGHAWIEPNIDWLNGELTHVISSLPGHLKNLFGSKDKAAKSFAVGIKEEWTS CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCHHHHHHHCCHHHHHHH QWEKQISLPKL HHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA