| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475871
Identifier: 113475871
GI number: 113475871
Start: 3478796
End: 3480319
Strand: Reverse
Name: 113475871
Synonym: Tery_2230
Alternate gene names: NA
Gene position: 3480319-3478796 (Counterclockwise)
Preceding gene: 113475872
Following gene: 113475870
Centisome position: 44.91
GC content: 26.31
Gene sequence:
>1524_bases ATGAAATTTACTGATAAGCAAAGAATCAAATTTCGTGAAGAGATTGAAAAGGTATTAAGTGAGGATAAACTGACAAGTAT ATTTTCTGAATATCCAGAGAAATTTGGAGCTAATTTTTATAATAAAATTAAAGGAGATACCTATCATACAAGGTTGATTA ATTTAATCATTGAGCTAAATAATACAGAACTTATTGTTGATTTTGTTAAAATTGTTAGTGAGGACTATCCATTAATTGAA GAACTTTACCAAACATATTCACAACTTTCTACTCTTATTTTTTTACTAAAAAAAATTTTTTCAGAAAACCAAAATTTTGG GATTTTTTTTGGGGACTTTGAAAATATAGATAAATTAGAAGAGCATTTATTAGAGTTAACTGAAGAAACTGAAAAAACTG AAAAAAATGGTAATGGTTTGCTTTTTAGTGATAGAGATAGTTTTTATTTTTACTATGATCCAAAGTTCATAGATTTTGTA GAACAATATTTAGTTAAAATTTTGAATGCTGAAGATATTAGAGATTATCTCAAGCAAAGATTGAGAAAATGGATAGAAAC AAATTGCTCAGATATAAATATTCCTGATAAAAAAGACAAACCATCTGATCTCCAAAGCTATCTTTTGATAACTATTTTTC CTATGGGAAGTCAGATTAAAAATCATAAAAAAACATTTAATGTTCAAGGTGAGTTTATTGAAAACTGGGGTCATACTAAA AATATTCAAGTTGAGCTGAAGAAAGAAGATTTTGAGGAAAATGGATATTCAGAAAAGCAAATTCCTAATATTATTTATAA ATTCATTGAGCAGGTTCAAGAGGTATATTTGCGTAAACTAGTGCAACAAAATAAAACTTATGATTTAAAACTTGAGCTAT TTTTAAAGAGAGAACTTTTTATTAAAGATTTTGAGTTTAAAATTCCTAGTGCTTTAAAAGCAAAACAAAAAGCTATTTGT GAAGAATATCCTGTAATTTTACGCTCTTTAGAACGATTACAACCAGGTAAAACTAGTTGGCTAAACTGTTGCAAAAAAAA CTGGAAAATTATGGAGAAAAAACCAGTTATATCAAATAATATTTTAGCTTTTGAAGTGGAAGATAAATTAAATGAATTCT TGTCTAACCCACAAAAAAGAAAACAGCTAGGAAATAAATTAGAGGATAAAATTATCCTGAAAATATCCTGTGGTTTACCT AAAGGAAATAATAAAGCATTTAATTTATTTGAAGTTATTTTAGAAAAGGGAGTTCCTTTATGTCTATGGATAAAAAGGAA AAATCAAAGGGATAATTTAAATGATTCCCATTATCAATCTTTAATAGATAAGCTCAATCATTTAATAGAATTAGAAAATT TGTCAGATGTTAATCAATTATATACACAAATTTTTGATATTCGTAAAACAGACCTGGCTATTGCTGATAGTTCTAAAACA GAATCTTTAGGTTACCATTTAAGAATTTTATGTGATTGTAATGACCGCAAACCAATCAACATTCCTGCTTTTAATCAATT TTAA
Upstream 100 bases:
>100_bases AACTTATTTTTGATTTTATTAAAGTTGTTAGGTATGAGTATCATAATTTTGCTCAAGATTTATAAATAGTAGATAAAATA GTAATGTAAGTACATTGCAA
Downstream 100 bases:
>100_bases TCAACTAAATAATTAGTTCTTAAAAAAGGAGAAAGCAGTGGTAAAAATTTATCCCCAAAATAATATGATGGAAAATCAAC AAGCCTGGCTTTTTTTCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 507; Mature: 507
Protein sequence:
>507_residues MKFTDKQRIKFREEIEKVLSEDKLTSIFSEYPEKFGANFYNKIKGDTYHTRLINLIIELNNTELIVDFVKIVSEDYPLIE ELYQTYSQLSTLIFLLKKIFSENQNFGIFFGDFENIDKLEEHLLELTEETEKTEKNGNGLLFSDRDSFYFYYDPKFIDFV EQYLVKILNAEDIRDYLKQRLRKWIETNCSDINIPDKKDKPSDLQSYLLITIFPMGSQIKNHKKTFNVQGEFIENWGHTK NIQVELKKEDFEENGYSEKQIPNIIYKFIEQVQEVYLRKLVQQNKTYDLKLELFLKRELFIKDFEFKIPSALKAKQKAIC EEYPVILRSLERLQPGKTSWLNCCKKNWKIMEKKPVISNNILAFEVEDKLNEFLSNPQKRKQLGNKLEDKIILKISCGLP KGNNKAFNLFEVILEKGVPLCLWIKRKNQRDNLNDSHYQSLIDKLNHLIELENLSDVNQLYTQIFDIRKTDLAIADSSKT ESLGYHLRILCDCNDRKPINIPAFNQF
Sequences:
>Translated_507_residues MKFTDKQRIKFREEIEKVLSEDKLTSIFSEYPEKFGANFYNKIKGDTYHTRLINLIIELNNTELIVDFVKIVSEDYPLIE ELYQTYSQLSTLIFLLKKIFSENQNFGIFFGDFENIDKLEEHLLELTEETEKTEKNGNGLLFSDRDSFYFYYDPKFIDFV EQYLVKILNAEDIRDYLKQRLRKWIETNCSDINIPDKKDKPSDLQSYLLITIFPMGSQIKNHKKTFNVQGEFIENWGHTK NIQVELKKEDFEENGYSEKQIPNIIYKFIEQVQEVYLRKLVQQNKTYDLKLELFLKRELFIKDFEFKIPSALKAKQKAIC EEYPVILRSLERLQPGKTSWLNCCKKNWKIMEKKPVISNNILAFEVEDKLNEFLSNPQKRKQLGNKLEDKIILKISCGLP KGNNKAFNLFEVILEKGVPLCLWIKRKNQRDNLNDSHYQSLIDKLNHLIELENLSDVNQLYTQIFDIRKTDLAIADSSKT ESLGYHLRILCDCNDRKPINIPAFNQF >Mature_507_residues MKFTDKQRIKFREEIEKVLSEDKLTSIFSEYPEKFGANFYNKIKGDTYHTRLINLIIELNNTELIVDFVKIVSEDYPLIE ELYQTYSQLSTLIFLLKKIFSENQNFGIFFGDFENIDKLEEHLLELTEETEKTEKNGNGLLFSDRDSFYFYYDPKFIDFV EQYLVKILNAEDIRDYLKQRLRKWIETNCSDINIPDKKDKPSDLQSYLLITIFPMGSQIKNHKKTFNVQGEFIENWGHTK NIQVELKKEDFEENGYSEKQIPNIIYKFIEQVQEVYLRKLVQQNKTYDLKLELFLKRELFIKDFEFKIPSALKAKQKAIC EEYPVILRSLERLQPGKTSWLNCCKKNWKIMEKKPVISNNILAFEVEDKLNEFLSNPQKRKQLGNKLEDKIILKISCGLP KGNNKAFNLFEVILEKGVPLCLWIKRKNQRDNLNDSHYQSLIDKLNHLIELENLSDVNQLYTQIFDIRKTDLAIADSSKT ESLGYHLRILCDCNDRKPINIPAFNQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60139; Mature: 60139
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFTDKQRIKFREEIEKVLSEDKLTSIFSEYPEKFGANFYNKIKGDTYHTRLINLIIELN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHEEEC NTELIVDFVKIVSEDYPLIEELYQTYSQLSTLIFLLKKIFSENQNFGIFFGDFENIDKLE CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH EHLLELTEETEKTEKNGNGLLFSDRDSFYFYYDPKFIDFVEQYLVKILNAEDIRDYLKQR HHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHH LRKWIETNCSDINIPDKKDKPSDLQSYLLITIFPMGSQIKNHKKTFNVQGEFIENWGHTK HHHHHHCCCCCCCCCCCCCCCHHHHHEEEHEEECCCHHHHCCCCEECCCHHHHHCCCCCC NIQVELKKEDFEENGYSEKQIPNIIYKFIEQVQEVYLRKLVQQNKTYDLKLELFLKRELF CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH IKDFEFKIPSALKAKQKAICEEYPVILRSLERLQPGKTSWLNCCKKNWKIMEKKPVISNN HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCCCCCC ILAFEVEDKLNEFLSNPQKRKQLGNKLEDKIILKISCGLPKGNNKAFNLFEVILEKGVPL EEEEEEHHHHHHHHCCHHHHHHHCCHHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCE CLWIKRKNQRDNLNDSHYQSLIDKLNHLIELENLSDVNQLYTQIFDIRKTDLAIADSSKT EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCEEEECCCCC ESLGYHLRILCDCNDRKPINIPAFNQF CCCCEEEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure MKFTDKQRIKFREEIEKVLSEDKLTSIFSEYPEKFGANFYNKIKGDTYHTRLINLIIELN CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHEEEC NTELIVDFVKIVSEDYPLIEELYQTYSQLSTLIFLLKKIFSENQNFGIFFGDFENIDKLE CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH EHLLELTEETEKTEKNGNGLLFSDRDSFYFYYDPKFIDFVEQYLVKILNAEDIRDYLKQR HHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHHH LRKWIETNCSDINIPDKKDKPSDLQSYLLITIFPMGSQIKNHKKTFNVQGEFIENWGHTK HHHHHHCCCCCCCCCCCCCCCHHHHHEEEHEEECCCHHHHCCCCEECCCHHHHHCCCCCC NIQVELKKEDFEENGYSEKQIPNIIYKFIEQVQEVYLRKLVQQNKTYDLKLELFLKRELF CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH IKDFEFKIPSALKAKQKAICEEYPVILRSLERLQPGKTSWLNCCKKNWKIMEKKPVISNN HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCCCCCC ILAFEVEDKLNEFLSNPQKRKQLGNKLEDKIILKISCGLPKGNNKAFNLFEVILEKGVPL EEEEEEHHHHHHHHCCHHHHHHHCCHHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCE CLWIKRKNQRDNLNDSHYQSLIDKLNHLIELENLSDVNQLYTQIFDIRKTDLAIADSSKT EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCEEEECCCCC ESLGYHLRILCDCNDRKPINIPAFNQF CCCCEEEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA