| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is pkn1 [H]
Identifier: 113475724
GI number: 113475724
Start: 3233969
End: 3236647
Strand: Reverse
Name: pkn1 [H]
Synonym: Tery_2071
Alternate gene names: 113475724
Gene position: 3236647-3233969 (Counterclockwise)
Preceding gene: 113475725
Following gene: 113475723
Centisome position: 41.76
GC content: 36.95
Gene sequence:
>2679_bases ATGTCGATTTCTAACTTCATAGAAGGATTACAAAAAGCTAATTATGACCCAACTGCTAGAGAAATAGCAGAAATAATTTG GTTATGGGTAAAAACTTTGCCGGATGGAGAATTAGAATTATTAGAAACTGATAAAAAAGATGCTCAAGGATCTGAATCAA ACAATCAAATTTACTCAGAGAAAAATAGACGAAATTTAAAAGTTAATATTCCTGAACTTCCAGCAAAAACAAATTTAGAT CTTTATCCGAAAGCTGCTGCTGATAAATATTTACCTAAAACAGACAATAATAAAAAGGAACGTTACCCTCTACAAGTTCC CGATGCTCCAGCTATTCCCAATAAACAGGAGCTTGGTATTGCTTTAAAATCTTTACGCCGAAAATTTCCATCCTCAACAG AACAGGAATTAAACGAAGCTAAAACTATTGATTTTTTTGTCGAACAAAAGATTTGGATGCCCATTAAACAACCAACTTTA ACCCGTCGTTGGCTAGATTTAGTATTGGTTATAGAAGTAAATAACTCCCTCGTAATTTGGAAACAAACTATTAAAGAGTT GAGGAAATTTCTCCAAAGTTTGGGGATTTTTCGTCATACTGAAACTAGGGGATTAAAATTTAATTCTTCTCAACTATTAC ATCAGGAATTGTTGTTTAAACTTATTGTTAGGGTATCTCCTGAATTTATACTATTTTTGATTTTATCCTCTCAAAACCAA AGGATTGAAATTTTCCACTACGATGATCCTCAGATGCGTCCCTACTCTCCAGAATTTATTGGGGCTACCAGTGGAAAAAC TTTAATTCTATTAGTAAGCGATCTAGTTTCTTCTGTTTGGTCTCGCCCAGAAACCTATACTCTTTTGCAGGAGTGGGGGC GAAAAGGGATGGTAAATTTATTGCAGCTTCTACCAGAACGTTTGTGGCTCCGCACTAATCTTGGTCAACAAAAGTCTTTA AAATTAAATGCTTCTGTTCGTCTTACTTCTAATCAGAATTTAACTATTATTCCTAGTTCAAAAAAACAAGAAATTTCTCA AGATGGAGAATTTAAATTACCCGTCCTTTGTCTTGACCCTAATATTTTAGAAGAATGGTCAAAATTATTAATGGGAGTAG GAAATAATCAGTCTGTTGGTTATGGAATTAAGCCTGATAATCATCGTTATTCTAACTTTGTTCAAGAAGAAATTACGGCT ACCGAAAGAGTAGAAAGGTTTCAAGAAATTGCCTCACCTAATGCCGTTAGACTAGCTGAACATCTCTCCGCAGTTCTTGT TACTTTACCTGTGATTAGAGTAATTCAATATACTATGCTTCCTCAGTTCAACCAAGGTCATGTGGCAGAAGTATTAATGG GAGGGTTATTTAAACCTTTAAGTGAAAAAATCACCCCTAATATTAATCCAGATGAAATCGAATTTGAGTTTTTTGATGGG GTGCGGGATGAACTATTGAGTGGGTTAACTGTTGATGAAATTACCGATGTTATTGAGGAAGTATCTTCTTATTTAGCTGA GAAAATGGGAATAAGTCCCAAAGAATTTGAAGCTCTGTTGATAGATTCTTCAAAACCTGAGAATAAGCTAGCTAAACAGG TTTATCCTTTAGCTCAAGTTCAGGCAGAAGTATTGGAGAAATTAGGGGGTTCTTATGCTTATTTTGCTAATCAAATAAGA GCTTCTAATACTGGTTCTACTAATGAAATAAAAGATTTAATTGAGTTTGAAACTGAAATTGAAATTGCTACTATTGTTTT TGAAGAAGAAACTAAGGAAGTTGAAATAGAATTACAAGAGTGGAGTTTTGAAACTCCTACTGTTAACAGGCTGGGTAAAA TTGTCGAAAGAACAATTCATAAAGCTTTTTACTTTACTCAAAGCCTTCCAGATAACGTTAGTCTAGAAATGGTGGCTATT CCTAGTGGTACTTTTACTATGGGTTCCCCTAAAAGTGAAGAAGGTAGCTATGATGATGAACGCCCCCAACATGATGTGAC TGTCCCTTCCTTTTTTATGGGCAAATATCCCGTTACTCAAGGACAGTGGAGAGCGATCGCCTCCCGAACAGACCTGAAAG AAAAAGAAGACCTAAACCCAGATCCATCTCGTTTTAAAAAACCATATAAAGGTATAGATAGATGGCAAAGGCCAGTTGAG ACGGTGAGTTGGTACAAAGCAGTAGAATTTTGTAAAAGACTATCGAAATTAACTGGAAAAAAGTACAGGTTGCCCAGTGA AGCAGAATGGGAATATGCCTGTCGGGCAGGAACTACTACACCTTTCTACTTTGGAGAAACTATAACACCTGAGTTAGTTA ACTATGATGGTAATATTACTTACGGCGATGGGCCCAAAGGAGAATATAAAAAACAAACAACTCCTGTAGGCCAATTTCCT GCTAATGCTTTTGGATTATATGATATGCATGGAAACGTGTGGGAATGGTGTGCTGATGATAGCCATGATAACTATGTGGG AGCTCCTACAGATGGAAGCGCTTGGGTTGATAGTAACGAAGACAGTTCTACTGATAGTTATACCCGTCTGCGGGGCGGTT CTTGGTGCAACTCTCCTATTGATTGCCGTTCTGCGGTTCGCAGCGGCTATCTTAGGCGCGACGTCCACGTCAGCTATGAT GGTTTTCGTCTTGTCTGCGATGGCGGGAGAACTCTTTAA
Upstream 100 bases:
>100_bases CAACAAAAAGAAAACGCTTATTGAGAAATGTTGGGGTGCAGTTCGAGGGGGGAGCGCTCGGACTGCATACTAACACCTGC CACCTAAAACCTAAGGCCTA
Downstream 100 bases:
>100_bases CCCTTTTCCCTTTTCCCCTTTTGCCCTTTACACTATGTTTCTTTTTCCTTTACCTCCCGCGAAGCGGGAAAAATTTTTTT GATGTCCAAGTGTCAAGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 892; Mature: 891
Protein sequence:
>892_residues MSISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSEKNRRNLKVNIPELPAKTNLD LYPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGIALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTL TRRWLDLVLVIEVNNSLVIWKQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQ RIEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNLLQLLPERLWLRTNLGQQKSL KLNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDPNILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITA TERVERFQEIASPNAVRLAEHLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDG VRDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQVQAEVLEKLGGSYAYFANQIR ASNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQEWSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAI PSGTFTMGSPKSEEGSYDDERPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVE TVSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNITYGDGPKGEYKKQTTPVGQFP ANAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNEDSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYD GFRLVCDGGRTL
Sequences:
>Translated_892_residues MSISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSEKNRRNLKVNIPELPAKTNLD LYPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGIALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTL TRRWLDLVLVIEVNNSLVIWKQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQ RIEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNLLQLLPERLWLRTNLGQQKSL KLNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDPNILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITA TERVERFQEIASPNAVRLAEHLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDG VRDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQVQAEVLEKLGGSYAYFANQIR ASNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQEWSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAI PSGTFTMGSPKSEEGSYDDERPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVE TVSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNITYGDGPKGEYKKQTTPVGQFP ANAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNEDSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYD GFRLVCDGGRTL >Mature_891_residues SISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSEKNRRNLKVNIPELPAKTNLDL YPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGIALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTLT RRWLDLVLVIEVNNSLVIWKQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQR IEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNLLQLLPERLWLRTNLGQQKSLK LNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDPNILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITAT ERVERFQEIASPNAVRLAEHLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDGV RDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQVQAEVLEKLGGSYAYFANQIRA SNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQEWSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAIP SGTFTMGSPKSEEGSYDDERPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVET VSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNITYGDGPKGEYKKQTTPVGQFPA NAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNEDSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYDG FRLVCDGGRTL
Specific function: Together with the serine/threonine kinase pknD, may play a role in the specific interactions with host proteins during intracellular growth [H]
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 protein kinase domain [H]
Homologues:
Organism=Homo sapiens, GI257470975, Length=204, Percent_Identity=35.2941176470588, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI257470977, Length=226, Percent_Identity=33.6283185840708, Blast_Score=89, Evalue=3e-17, Organism=Homo sapiens, GI38202250, Length=226, Percent_Identity=33.6283185840708, Blast_Score=88, Evalue=4e-17, Organism=Homo sapiens, GI194248087, Length=243, Percent_Identity=30.8641975308642, Blast_Score=86, Evalue=1e-16, Organism=Homo sapiens, GI194248088, Length=306, Percent_Identity=29.0849673202614, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI226437577, Length=145, Percent_Identity=36.551724137931, Blast_Score=76, Evalue=2e-13, Organism=Drosophila melanogaster, GI20130397, Length=224, Percent_Identity=31.25, Blast_Score=83, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016187 - InterPro: IPR011009 - InterPro: IPR000719 - InterPro: IPR017442 - InterPro: IPR005532 [H]
Pfam domain/function: PF03781 DUF323; PF00069 Pkinase [H]
EC number: =2.7.11.1 [H]
Molecular weight: Translated: 101740; Mature: 101609
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSE CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHCC KNRRNLKVNIPELPAKTNLDLYPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGI CCCCCEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH ALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTLTRRWLDLVLVIEVNNSLVIW HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEEEEEECCCEEEH KQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQ HHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC RIEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNL EEEEEECCCCCCCCCCCCEEECCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCHHHHH LQLLPERLWLRTNLGQQKSLKLNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDP HHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEECCHHHHHCCCCCEEEEEEEECC NILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITATERVERFQEIASPNAVRLAE HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH HLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDG HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHH VRDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCCCHHHHHHHHHHHHHH QAEVLEKLGGSYAYFANQIRASNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQE HHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCEEEEEEEC WSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAIPSGTFTMGSPKSEEGSYDDE CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCC RPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVE CCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCHHHCCCCCHHHHHCHHHHHHHHHHHHH TVSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNIT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCHHHCCCCCEEE YGDGPKGEYKKQTTPVGQFPANAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNE ECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCEECCCCCCCCCCCCCC DSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYDGFRLVCDGGRTL CCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCEECEEEECCCEEEEECCCCCC >Mature Secondary Structure SISNFIEGLQKANYDPTAREIAEIIWLWVKTLPDGELELLETDKKDAQGSESNNQIYSE CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHCC KNRRNLKVNIPELPAKTNLDLYPKAAADKYLPKTDNNKKERYPLQVPDAPAIPNKQELGI CCCCCEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH ALKSLRRKFPSSTEQELNEAKTIDFFVEQKIWMPIKQPTLTRRWLDLVLVIEVNNSLVIW HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEEEEEEECCCEEEH KQTIKELRKFLQSLGIFRHTETRGLKFNSSQLLHQELLFKLIVRVSPEFILFLILSSQNQ HHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC RIEIFHYDDPQMRPYSPEFIGATSGKTLILLVSDLVSSVWSRPETYTLLQEWGRKGMVNL EEEEEECCCCCCCCCCCCEEECCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCHHHHH LQLLPERLWLRTNLGQQKSLKLNASVRLTSNQNLTIIPSSKKQEISQDGEFKLPVLCLDP HHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCEEEEECCHHHHHCCCCCEEEEEEEECC NILEEWSKLLMGVGNNQSVGYGIKPDNHRYSNFVQEEITATERVERFQEIASPNAVRLAE HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH HLSAVLVTLPVIRVIQYTMLPQFNQGHVAEVLMGGLFKPLSEKITPNINPDEIEFEFFDG HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHH VRDELLSGLTVDEITDVIEEVSSYLAEKMGISPKEFEALLIDSSKPENKLAKQVYPLAQV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCEEEEECCCCCHHHHHHHHHHHHHH QAEVLEKLGGSYAYFANQIRASNTGSTNEIKDLIEFETEIEIATIVFEEETKEVEIELQE HHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCEEEEEEEC WSFETPTVNRLGKIVERTIHKAFYFTQSLPDNVSLEMVAIPSGTFTMGSPKSEEGSYDDE CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECCCCCCCCCCCCCC RPQHDVTVPSFFMGKYPVTQGQWRAIASRTDLKEKEDLNPDPSRFKKPYKGIDRWQRPVE CCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCHHHCCCCCHHHHHCHHHHHHHHHHHHH TVSWYKAVEFCKRLSKLTGKKYRLPSEAEWEYACRAGTTTPFYFGETITPELVNYDGNIT HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEECCCCCCHHHCCCCCEEE YGDGPKGEYKKQTTPVGQFPANAFGLYDMHGNVWEWCADDSHDNYVGAPTDGSAWVDSNE ECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHCCCCCCCCEECCCCCCCCCCCCCC DSSTDSYTRLRGGSWCNSPIDCRSAVRSGYLRRDVHVSYDGFRLVCDGGRTL CCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCEECEEEECCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]