| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475725
Identifier: 113475725
GI number: 113475725
Start: 3236804
End: 3237550
Strand: Reverse
Name: 113475725
Synonym: Tery_2072
Alternate gene names: NA
Gene position: 3237550-3236804 (Counterclockwise)
Preceding gene: 113475726
Following gene: 113475724
Centisome position: 41.77
GC content: 35.88
Gene sequence:
>747_bases ATGACCAATCTCTGGTTAGCATTAGCAAGTATGGTTGGATGGTTTGTCAGCAACCTAGCAGGTGGGGGTAGTTCCTTTCT CTTAATGCCAATAGTAGGTTTATTTTTAGGAACTATAGCTATTCCACCAGTCATTACGACTGGAGGAATTCTTGGTAACG CTGAACGTGTTTTTGCTTATTGGCAAAAAATTAACTGGACTGTCATTTTGTGGGAACTACCTGGTGCTATTTTTGGTGGT TGTTTAGGGGCTTTTATTTTCACTCAAATTCCTGTCAGATGGCTCAGTTTTTTAGTAGGATTATTTCTATTGATCTCTGG GATAAATTTAATTATTAAAAATCAAGAAAAATCTTTTACTGTTCGTGCATGGTATTTTTTGCCTGCAGGTTTTATTTATT CCTTTTTATCAGGAATTATTGGTAGTATGGGACCCTTACTTGCACCATTTTACCTGAATTATGGTTTGGAAAAAGAAGAA TTATTGGGAACTCAAGCAGTTAACCGGATGGTAGTTCATATTTTTAAGGCAATTACTTATGCAATTTTTGGTAATTTAAC TTTACCTTATTTGGGATATGGGATACTCATAGGAGTAGCTGCTTATCCAGGAAATAGGTTGGGTCATTTAGTATTAGAAA AAATTAGTCCTCAGCTGTTCCGTCAATTAGTAACTGCTTTTGTGATTTTCAGTGGTCTTTTTCTTCTCTGGGAACAAAGG AGTCTGTTAATGTTCACGGGGTTATAA
Upstream 100 bases:
>100_bases AAATTCTAAAGATAATTTCTGAATTTTAGTTGATATTTAAAATTCAGAAATTTAAGCTAAAAAGGAACTATAGTAAAAAA TTATAACTTAATCAAGTAAT
Downstream 100 bases:
>100_bases GCTAATTAAAAGCTATATATAGAAGGGGTTTTGCATTCTGCAACTGAAGAATATTTCAACAAAAAGAAAACGCTTATTGA GAAATGTTGGGGTGCAGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MTNLWLALASMVGWFVSNLAGGGSSFLLMPIVGLFLGTIAIPPVITTGGILGNAERVFAYWQKINWTVILWELPGAIFGG CLGAFIFTQIPVRWLSFLVGLFLLISGINLIIKNQEKSFTVRAWYFLPAGFIYSFLSGIIGSMGPLLAPFYLNYGLEKEE LLGTQAVNRMVVHIFKAITYAIFGNLTLPYLGYGILIGVAAYPGNRLGHLVLEKISPQLFRQLVTAFVIFSGLFLLWEQR SLLMFTGL
Sequences:
>Translated_248_residues MTNLWLALASMVGWFVSNLAGGGSSFLLMPIVGLFLGTIAIPPVITTGGILGNAERVFAYWQKINWTVILWELPGAIFGG CLGAFIFTQIPVRWLSFLVGLFLLISGINLIIKNQEKSFTVRAWYFLPAGFIYSFLSGIIGSMGPLLAPFYLNYGLEKEE LLGTQAVNRMVVHIFKAITYAIFGNLTLPYLGYGILIGVAAYPGNRLGHLVLEKISPQLFRQLVTAFVIFSGLFLLWEQR SLLMFTGL >Mature_247_residues TNLWLALASMVGWFVSNLAGGGSSFLLMPIVGLFLGTIAIPPVITTGGILGNAERVFAYWQKINWTVILWELPGAIFGGC LGAFIFTQIPVRWLSFLVGLFLLISGINLIIKNQEKSFTVRAWYFLPAGFIYSFLSGIIGSMGPLLAPFYLNYGLEKEEL LGTQAVNRMVVHIFKAITYAIFGNLTLPYLGYGILIGVAAYPGNRLGHLVLEKISPQLFRQLVTAFVIFSGLFLLWEQRS LLMFTGL
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27383; Mature: 27252
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLWLALASMVGWFVSNLAGGGSSFLLMPIVGLFLGTIAIPPVITTGGILGNAERVFAY CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHH WQKINWTVILWELPGAIFGGCLGAFIFTQIPVRWLSFLVGLFLLISGINLIIKNQEKSFT HHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEE VRAWYFLPAGFIYSFLSGIIGSMGPLLAPFYLNYGLEKEELLGTQAVNRMVVHIFKAITY EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH AIFGNLTLPYLGYGILIGVAAYPGNRLGHLVLEKISPQLFRQLVTAFVIFSGLFLLWEQR HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC SLLMFTGL CCEEEECC >Mature Secondary Structure TNLWLALASMVGWFVSNLAGGGSSFLLMPIVGLFLGTIAIPPVITTGGILGNAERVFAY CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHH WQKINWTVILWELPGAIFGGCLGAFIFTQIPVRWLSFLVGLFLLISGINLIIKNQEKSFT HHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEE VRAWYFLPAGFIYSFLSGIIGSMGPLLAPFYLNYGLEKEELLGTQAVNRMVVHIFKAITY EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH AIFGNLTLPYLGYGILIGVAAYPGNRLGHLVLEKISPQLFRQLVTAFVIFSGLFLLWEQR HHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC SLLMFTGL CCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA