| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is pkn1 [H]
Identifier: 113475722
GI number: 113475722
Start: 3232566
End: 3233411
Strand: Reverse
Name: pkn1 [H]
Synonym: Tery_2069
Alternate gene names: 113475722
Gene position: 3233411-3232566 (Counterclockwise)
Preceding gene: 113475723
Following gene: 113475721
Centisome position: 41.72
GC content: 43.85
Gene sequence:
>846_bases ATGGCGACAACACCTATCATAAAACGTCAAAAACAAAAAATTCGAGGTTACAGAGAATATGCTGAGGTGCCTCTGGAAAT GTTTTTAATTCCTAGTGGCACCTTTACAATGGGCGCACCAAAATCTGAAGAAGGAAGTAGAAATAATGAAAGACCCCAAC ATAATGTAACTATCTCCGAGTTTCTCATGGGCCGTTATCCTGTTACTCAAGGACAGTGGAGAGCGATCGCCTCCCGAGCA GACCTGAAAGAAAAACAAGATTTAGACCCAGATCCATCTTACTTTAAAAAACCGTACCAAGATATAGATAGATGGCAAAG ACCAGTAGAGCGAGTGAATTGGTACGAAGCAGTAGAATTCTGCCAACGACTTTCAAAACTAACTCGAAGAAATTATAGAC TACCAAGGGAAGCTGAATGGGAATATGCCTGTCGTGCTGGAACTACAACTCCCTTTCATTTTGGAGAAACTATTACTACA GACTTAGCCAACTATGACGGGACAGGCGATGAAGGTTCTTACGGCAGAGGACTCAAAGGAGAATATCGTCAGGAAACTAC ACCTGTAGGTTATTTTAAAGTAGCTAATTCTTTTGGGTTGAGCGATATGCACGGGAATGTCTGGGAATGGTGTGCTGATG AGTGGCATGATAATTATGAAAATGCTCCTACAGATGGCAGTGTTTGGCTAAATGGAAATAAAAAACGTTCACCGCTGCGG GGCGGTTCCTGGGTCAACATTCCTAATGATTGCCGTTCTGCGATTCGCTACAACTCTGCTGGGCGCGACGTCCACTACGA CGTTATCGGTTTTCGTGTAGTCTGCGACGGCGGGAGAACTCTTTAA
Upstream 100 bases:
>100_bases AAGATTATCTTCAAGGTAAAATTAGGTGAGGAAACTTTAAGCAACATAGAGTAAAACTGAAAATTCCTTCAGCCCCCCCA ACATTTGCAAAAGTAGTTAC
Downstream 100 bases:
>100_bases CCCTTTTCTCTTTTCCCCTTCAGCCCTTTACCCTGTTTTTCTTTTTCCTGAAATTTCCTGCAGCGACAGTATTATCTATC TTTGTTGGGTTTGGCGAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MATTPIIKRQKQKIRGYREYAEVPLEMFLIPSGTFTMGAPKSEEGSRNNERPQHNVTISEFLMGRYPVTQGQWRAIASRA DLKEKQDLDPDPSYFKKPYQDIDRWQRPVERVNWYEAVEFCQRLSKLTRRNYRLPREAEWEYACRAGTTTPFHFGETITT DLANYDGTGDEGSYGRGLKGEYRQETTPVGYFKVANSFGLSDMHGNVWEWCADEWHDNYENAPTDGSVWLNGNKKRSPLR GGSWVNIPNDCRSAIRYNSAGRDVHYDVIGFRVVCDGGRTL
Sequences:
>Translated_281_residues MATTPIIKRQKQKIRGYREYAEVPLEMFLIPSGTFTMGAPKSEEGSRNNERPQHNVTISEFLMGRYPVTQGQWRAIASRA DLKEKQDLDPDPSYFKKPYQDIDRWQRPVERVNWYEAVEFCQRLSKLTRRNYRLPREAEWEYACRAGTTTPFHFGETITT DLANYDGTGDEGSYGRGLKGEYRQETTPVGYFKVANSFGLSDMHGNVWEWCADEWHDNYENAPTDGSVWLNGNKKRSPLR GGSWVNIPNDCRSAIRYNSAGRDVHYDVIGFRVVCDGGRTL >Mature_280_residues ATTPIIKRQKQKIRGYREYAEVPLEMFLIPSGTFTMGAPKSEEGSRNNERPQHNVTISEFLMGRYPVTQGQWRAIASRAD LKEKQDLDPDPSYFKKPYQDIDRWQRPVERVNWYEAVEFCQRLSKLTRRNYRLPREAEWEYACRAGTTTPFHFGETITTD LANYDGTGDEGSYGRGLKGEYRQETTPVGYFKVANSFGLSDMHGNVWEWCADEWHDNYENAPTDGSVWLNGNKKRSPLRG GSWVNIPNDCRSAIRYNSAGRDVHYDVIGFRVVCDGGRTL
Specific function: Together with the serine/threonine kinase pknD, may play a role in the specific interactions with host proteins during intracellular growth [H]
COG id: COG1262
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 protein kinase domain [H]
Homologues:
Organism=Homo sapiens, GI257470975, Length=286, Percent_Identity=29.020979020979, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI194248087, Length=279, Percent_Identity=26.8817204301075, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI194248088, Length=294, Percent_Identity=25.1700680272109, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI38202250, Length=304, Percent_Identity=26.6447368421053, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI226437577, Length=184, Percent_Identity=30.9782608695652, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI257470977, Length=238, Percent_Identity=27.3109243697479, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI20130397, Length=230, Percent_Identity=27.8260869565217, Blast_Score=68, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016187 - InterPro: IPR011009 - InterPro: IPR000719 - InterPro: IPR017442 - InterPro: IPR005532 [H]
Pfam domain/function: PF03781 DUF323; PF00069 Pkinase [H]
EC number: =2.7.11.1 [H]
Molecular weight: Translated: 32418; Mature: 32287
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATTPIIKRQKQKIRGYREYAEVPLEMFLIPSGTFTMGAPKSEEGSRNNERPQHNVTISE CCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHH FLMGRYPVTQGQWRAIASRADLKEKQDLDPDPSYFKKPYQDIDRWQRPVERVNWYEAVEF HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CQRLSKLTRRNYRLPREAEWEYACRAGTTTPFHFGETITTDLANYDGTGDEGSYGRGLKG HHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC EYRQETTPVGYFKVANSFGLSDMHGNVWEWCADEWHDNYENAPTDGSVWLNGNKKRSPLR CHHHCCCCCCCEEEHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCC GGSWVNIPNDCRSAIRYNSAGRDVHYDVIGFRVVCDGGRTL CCCEECCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCC >Mature Secondary Structure ATTPIIKRQKQKIRGYREYAEVPLEMFLIPSGTFTMGAPKSEEGSRNNERPQHNVTISE CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCHHH FLMGRYPVTQGQWRAIASRADLKEKQDLDPDPSYFKKPYQDIDRWQRPVERVNWYEAVEF HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CQRLSKLTRRNYRLPREAEWEYACRAGTTTPFHFGETITTDLANYDGTGDEGSYGRGLKG HHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC EYRQETTPVGYFKVANSFGLSDMHGNVWEWCADEWHDNYENAPTDGSVWLNGNKKRSPLR CHHHCCCCCCCEEEHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCC GGSWVNIPNDCRSAIRYNSAGRDVHYDVIGFRVVCDGGRTL CCCEECCCHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10684935 [H]