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The map label for this gene is rimK

Identifier: 113475694

GI number: 113475694

Start: 3179580

End: 3180479

Strand: Reverse

Name: rimK

Synonym: Tery_2039

Alternate gene names: 113475694

Gene position: 3180479-3179580 (Counterclockwise)

Preceding gene: 113475695

Following gene: 113475693

Centisome position: 41.04

GC content: 36.22

Gene sequence:

>900_bases
ATGAAAATTGCTATTTTATCTACTGATCCAAGTCTTTATTCTACTAGAAAATTGCTGGAAGCTGGAGAACAACGCGGTCA
TGAAGTTTATGTTATTGATTACTTACGCTGTTATATGAAAATTACTTCTATGAAGACTGAAGTTATTTACATGGGTAAAT
CTTTAAAAGGATTTGATGCTATTATTCCTCGCATTGGTGCTTCTAAAACATTTTATGGTACGGCAGTAGTTAGACAGTTT
GAAATGATGGGAGTTTTTACAGCAAATCCTTCTCTAGCTATTTCTCGCTCTCGTGATAAATTACATTGTTTACAATTATT
AGCTCGAGAAGGAATAGAATTGCCTGTGACTAGTTTTGCTCATTTTACTAAAGATATTAATAGTTTAATTAATACTGTTG
GTGGCGCTCCTTTGGTGATAAAATTATTAGAAGGATCTCAAGGAATAGGAGTAGTTTTAGCTGAAACTTATCAAGTGGCT
AAGTCAGTTATTGAAGCTTTTTCTGGTTTGAATGCTAATTTTTTGGTACAGGAATTTATTGAAGAGGCAGGTGGGGCAGA
TGTCCGATGTTTTGTAGTAGGAGATAGAGTAATAGCTGCTATTAAAAGACAGGGAACTGAGGGAGAATTTCGCTCAAATT
TGCATCAAGGTGGTACAGCAAAAAAAATTAAATTGACTCCACAAGAACGCTCAATTGCTATGCGTTCAGCTAAGGCAATA
GGGCTGAAAGTTGCGGGGGTAGATTTATTACGTTCTGATCATGGCCCAGTAGTTATGGAGGTGAATTCTTCTCCTGGTTT
AGAAGGAATAGAAACTGCTACAGGAGTAGATGTTTCTGGCAAAATAATAGAGTTTTTAGAGAAGAATTTAGGAAAAGGTC
CACTGGGCGATCGCCTTTAA

Upstream 100 bases:

>100_bases
GTAAGAAACTATAACAAGCATTTATTAAATTGGTATTCTCCCCTTTAAATGGGAAACTTTAAACCTAATTTTCTGATTAC
AAAAGGTAGAAAAGAACAAA

Downstream 100 bases:

>100_bases
GCTTGAAGAAGTCAATTATTAGTTATAGTAGTTGCTACAACTGTTAGGATGCTTTATTGTTACTAGTTGCCTTTTTCCTA
TTGCGTTTCAATCAAAATAC

Product: SSU ribosomal protein S6P modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKIAILSTDPSLYSTRKLLEAGEQRGHEVYVIDYLRCYMKITSMKTEVIYMGKSLKGFDAIIPRIGASKTFYGTAVVRQF
EMMGVFTANPSLAISRSRDKLHCLQLLAREGIELPVTSFAHFTKDINSLINTVGGAPLVIKLLEGSQGIGVVLAETYQVA
KSVIEAFSGLNANFLVQEFIEEAGGADVRCFVVGDRVIAAIKRQGTEGEFRSNLHQGGTAKKIKLTPQERSIAMRSAKAI
GLKVAGVDLLRSDHGPVVMEVNSSPGLEGIETATGVDVSGKIIEFLEKNLGKGPLGDRL

Sequences:

>Translated_299_residues
MKIAILSTDPSLYSTRKLLEAGEQRGHEVYVIDYLRCYMKITSMKTEVIYMGKSLKGFDAIIPRIGASKTFYGTAVVRQF
EMMGVFTANPSLAISRSRDKLHCLQLLAREGIELPVTSFAHFTKDINSLINTVGGAPLVIKLLEGSQGIGVVLAETYQVA
KSVIEAFSGLNANFLVQEFIEEAGGADVRCFVVGDRVIAAIKRQGTEGEFRSNLHQGGTAKKIKLTPQERSIAMRSAKAI
GLKVAGVDLLRSDHGPVVMEVNSSPGLEGIETATGVDVSGKIIEFLEKNLGKGPLGDRL
>Mature_299_residues
MKIAILSTDPSLYSTRKLLEAGEQRGHEVYVIDYLRCYMKITSMKTEVIYMGKSLKGFDAIIPRIGASKTFYGTAVVRQF
EMMGVFTANPSLAISRSRDKLHCLQLLAREGIELPVTSFAHFTKDINSLINTVGGAPLVIKLLEGSQGIGVVLAETYQVA
KSVIEAFSGLNANFLVQEFIEEAGGADVRCFVVGDRVIAAIKRQGTEGEFRSNLHQGGTAKKIKLTPQERSIAMRSAKAI
GLKVAGVDLLRSDHGPVVMEVNSSPGLEGIETATGVDVSGKIIEFLEKNLGKGPLGDRL

Specific function: Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6

COG id: COG0189

COG function: function code HJ; Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ATP-grasp domain

Homologues:

Organism=Homo sapiens, GI164663810, Length=213, Percent_Identity=30.0469483568075, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI134254462, Length=232, Percent_Identity=32.3275862068966, Blast_Score=82, Evalue=5e-16,
Organism=Escherichia coli, GI1787076, Length=289, Percent_Identity=60.2076124567474, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMK_TRIEI (Q113P2)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_721755.1
- STRING:   Q113P2
- GeneID:   4243643
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_2039
- NMPDR:   fig|203124.1.peg.2242
- eggNOG:   COG0189
- HOGENOM:   HBG679591
- OMA:   CREPRLY
- PhylomeDB:   Q113P2
- BioCyc:   TERY203124:TERY_2039-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01552
- InterPro:   IPR011761
- InterPro:   IPR013651
- InterPro:   IPR013815
- InterPro:   IPR013816
- InterPro:   IPR004666
- Gene3D:   G3DSA:3.30.1490.20
- Gene3D:   G3DSA:3.30.470.20
- TIGRFAMs:   TIGR00768

Pfam domain/function: PF08443 RimK

EC number: NA

Molecular weight: Translated: 32348; Mature: 32348

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS50975 ATP_GRASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAILSTDPSLYSTRKLLEAGEQRGHEVYVIDYLRCYMKITSMKTEVIYMGKSLKGFDA
CEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCEEEEEECCCCCCHHH
IIPRIGASKTFYGTAVVRQFEMMGVFTANPSLAISRSRDKLHCLQLLAREGIELPVTSFA
HHHCCCCCCCHHHHHHHHHHHHHEEEECCCCEEEECCCHHHHHHHHHHHCCCCCCHHHHH
HFTKDINSLINTVGGAPLVIKLLEGSQGIGVVLAETYQVAKSVIEAFSGLNANFLVQEFI
HHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHH
EEAGGADVRCFVVGDRVIAAIKRQGTEGEFRSNLHQGGTAKKIKLTPQERSIAMRSAKAI
HHCCCCCEEEEEECHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
GLKVAGVDLLRSDHGPVVMEVNSSPGLEGIETATGVDVSGKIIEFLEKNLGKGPLGDRL
EEEEECHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKIAILSTDPSLYSTRKLLEAGEQRGHEVYVIDYLRCYMKITSMKTEVIYMGKSLKGFDA
CEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCEEEEEECCCCCCHHH
IIPRIGASKTFYGTAVVRQFEMMGVFTANPSLAISRSRDKLHCLQLLAREGIELPVTSFA
HHHCCCCCCCHHHHHHHHHHHHHEEEECCCCEEEECCCHHHHHHHHHHHCCCCCCHHHHH
HFTKDINSLINTVGGAPLVIKLLEGSQGIGVVLAETYQVAKSVIEAFSGLNANFLVQEFI
HHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHH
EEAGGADVRCFVVGDRVIAAIKRQGTEGEFRSNLHQGGTAKKIKLTPQERSIAMRSAKAI
HHCCCCCEEEEEECHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
GLKVAGVDLLRSDHGPVVMEVNSSPGLEGIETATGVDVSGKIIEFLEKNLGKGPLGDRL
EEEEECHHHHCCCCCCEEEEECCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Glu; Ribosomal protein S6 [C]

Specific reaction: Catalyzes the addition of glutamic acids to the carboxyl end of ribosomal protein S6 [C]

General reaction: Ligases; Forming Carbon-Nitrogen Bonds; Acid-D-Amino-Acid Ligases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA