| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475652
Identifier: 113475652
GI number: 113475652
Start: 3103111
End: 3103572
Strand: Reverse
Name: 113475652
Synonym: Tery_1989
Alternate gene names: NA
Gene position: 3103572-3103111 (Counterclockwise)
Preceding gene: 113475653
Following gene: 113475651
Centisome position: 40.05
GC content: 34.85
Gene sequence:
>462_bases ATGACTGATTCTCAAAAAGTTCCTGTAGATGAAAAATTTGTACCTTTTCTCCAAAAAGTTCAGACTCAAGCAAGATTACC GGATATTTACGATGCTAGAGATATTAGTATTATTATATTTCGGACAATGCGTGATTTGATGACAACAGAAGCATCTAATC AGATCGCCTCAGACTTAGCTTCTAGTAGTGAAAAACCAGACCCAGATGAAATAGGAGAACTTTGGAAAGATAACAACCCA CTTGTTGCTTTTCTTAGTAAAGTTCGTCGTCCACTTATATTTGATGGTAAGACTTTTATTTTCCGAGTTAGCCAAGAAGC TGGAGTTCCTAAAGGAATAGCAGCTGAAACAGTAATTAAAGCAGTTTTTTCTGCTGTTAAAGAAGAATTATCAACTCAGA GAATTCAAGAAATAGCTAAGTTTATGCCAGATGAAATTAAGATTATGTGGAACAAAGCTTAG
Upstream 100 bases:
>100_bases TCTCTAATCCCTATTTTTAATAAAATTATAGTAAGACTTTTAATATTTGATATTAACTTATGATATCATCTAATAATCTA ATAAAATTCAAGGTATAATT
Downstream 100 bases:
>100_bases AAAGTTGATATTTTTTTCAGGTGTTATTGATTCTATTCAGTGGGGAAAGATTACTCTTTAAATTGAATTTTTTGCATTCA ATATAAATTATAAATTGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MTDSQKVPVDEKFVPFLQKVQTQARLPDIYDARDISIIIFRTMRDLMTTEASNQIASDLASSSEKPDPDEIGELWKDNNP LVAFLSKVRRPLIFDGKTFIFRVSQEAGVPKGIAAETVIKAVFSAVKEELSTQRIQEIAKFMPDEIKIMWNKA
Sequences:
>Translated_153_residues MTDSQKVPVDEKFVPFLQKVQTQARLPDIYDARDISIIIFRTMRDLMTTEASNQIASDLASSSEKPDPDEIGELWKDNNP LVAFLSKVRRPLIFDGKTFIFRVSQEAGVPKGIAAETVIKAVFSAVKEELSTQRIQEIAKFMPDEIKIMWNKA >Mature_152_residues TDSQKVPVDEKFVPFLQKVQTQARLPDIYDARDISIIIFRTMRDLMTTEASNQIASDLASSSEKPDPDEIGELWKDNNPL VAFLSKVRRPLIFDGKTFIFRVSQEAGVPKGIAAETVIKAVFSAVKEELSTQRIQEIAKFMPDEIKIMWNKA
Specific function: Unknown
COG id: COG5502
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17332; Mature: 17201
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSQKVPVDEKFVPFLQKVQTQARLPDIYDARDISIIIFRTMRDLMTTEASNQIASDLA CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SSSEKPDPDEIGELWKDNNPLVAFLSKVRRPLIFDGKTFIFRVSQEAGVPKGIAAETVIK HCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCEEECCCEEEEEECHHCCCCCCHHHHHHHH AVFSAVKEELSTQRIQEIAKFMPDEIKIMWNKA HHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCC >Mature Secondary Structure TDSQKVPVDEKFVPFLQKVQTQARLPDIYDARDISIIIFRTMRDLMTTEASNQIASDLA CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SSSEKPDPDEIGELWKDNNPLVAFLSKVRRPLIFDGKTFIFRVSQEAGVPKGIAAETVIK HCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCEEECCCEEEEEECHHCCCCCCHHHHHHHH AVFSAVKEELSTQRIQEIAKFMPDEIKIMWNKA HHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA