| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475651
Identifier: 113475651
GI number: 113475651
Start: 3101583
End: 3102569
Strand: Reverse
Name: 113475651
Synonym: Tery_1988
Alternate gene names: NA
Gene position: 3102569-3101583 (Counterclockwise)
Preceding gene: 113475652
Following gene: 113475650
Centisome position: 40.03
GC content: 31.0
Gene sequence:
>987_bases ATGAGAAAAACAGCTTTTATACCTTTCTTAGCTAAACTAGGTAAGGCTTTAACTAAGAAAAAAATTACTGTTTTACAGAT TAATATTGGTAGACGTTGTAATCTTGCTTGTACTCATTGTCATGTGGAAGCTAGTCCAAAAAGAACAGAAGAACTTAGTA AAGAAATTTGTGAACAATTAATTGAGTTAATTAATAGATTTCCTCAAATTCAAACAGTTGATTTGACCGGGGGCGCACCA GAAATGAATTATGGTTTTAAACCCTTAGTTGAAGCTGCAATAAAAAATAATAAAGAAGTAATTGTTCGTTCTAATTTGAC AATTTATTTTGTGCCAGGGTTTGAAGATATTCCACAGTATTGTGCTGAAAATAAACTCAGAATTATTGCATCGTTACCTT GTTATTTAGAAGATAATGTAGATAAAATGCGTGGCAATGGTGTTTATCAAAAGTCTATTAGGGCATTGCAATGGTTGAAT AGATTAGGATACGGACAAAATCAAAGTATGATATTAGATTTAGTTTATAATCCTCCAGTCCCGAATAGTTATAAGTTTGC ACTTCCTGCCAATCAAAAAAATTTAGAACAAGACTATAAAAGTTATTTAAAAGAACATTTCAACGTCAAATTTAATCAAC TATTTACAATTACTAATTTACCTATAGGTAGAACTAGGCTTTTTCTAGAAAACCTAAAGATACATCAACCTTATTTAGAC TTCTTAGAGGCAAATTTTAATGGTGAAACTATAGAAAATTTAATGTGCCGGAACGAGTTATCAATTGATTATTTAGGTAA TGTTTATGACTGTGACTTTAATCAAATGGAAAATATTCCGGCTAAAACTTCAAAAGGTGAAACAATTACAGTAGCTAAGT TATTAGAAGGTAATAGTTTAGACATAATTGAACAAGTACAGACAGCAAATTATTGTTACGGTTGTACCGCAGGTTGTGGA TCTAGCTGCGGTGGAGCACTAGTATAA
Upstream 100 bases:
>100_bases AAATTTATAAAGTTGAATTTCGAGTTAAATTTGTATATTTATTGATCATATGACTTATTCCCTTCTTTATTTTTTCAATT AGTTATTAAAATTTATTGCA
Downstream 100 bases:
>100_bases ATGAGACAATGTAATATGATAAAAACTATTTATGTGTAATAGAAATGTCCGAAAAATCATATAGAAAATTACATGAAACT TCTTATCAAGAATTTGAAAA
Product: radical SAM family protein
Products: NA
Alternate protein names: Radical SAM Domain-Containing Protein; Fe-S Oxidoreductase; L-Asparaginase II; Radical SAM Superfamily Protein; Radical SAM Family Protein; Fe-S Oxidoreductases; NifB/MoaA Family Fe-S Oxidoreductase; Fe-S Oxidoreductase Of MoaA/NifB/PqqE Family
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MRKTAFIPFLAKLGKALTKKKITVLQINIGRRCNLACTHCHVEASPKRTEELSKEICEQLIELINRFPQIQTVDLTGGAP EMNYGFKPLVEAAIKNNKEVIVRSNLTIYFVPGFEDIPQYCAENKLRIIASLPCYLEDNVDKMRGNGVYQKSIRALQWLN RLGYGQNQSMILDLVYNPPVPNSYKFALPANQKNLEQDYKSYLKEHFNVKFNQLFTITNLPIGRTRLFLENLKIHQPYLD FLEANFNGETIENLMCRNELSIDYLGNVYDCDFNQMENIPAKTSKGETITVAKLLEGNSLDIIEQVQTANYCYGCTAGCG SSCGGALV
Sequences:
>Translated_328_residues MRKTAFIPFLAKLGKALTKKKITVLQINIGRRCNLACTHCHVEASPKRTEELSKEICEQLIELINRFPQIQTVDLTGGAP EMNYGFKPLVEAAIKNNKEVIVRSNLTIYFVPGFEDIPQYCAENKLRIIASLPCYLEDNVDKMRGNGVYQKSIRALQWLN RLGYGQNQSMILDLVYNPPVPNSYKFALPANQKNLEQDYKSYLKEHFNVKFNQLFTITNLPIGRTRLFLENLKIHQPYLD FLEANFNGETIENLMCRNELSIDYLGNVYDCDFNQMENIPAKTSKGETITVAKLLEGNSLDIIEQVQTANYCYGCTAGCG SSCGGALV >Mature_328_residues MRKTAFIPFLAKLGKALTKKKITVLQINIGRRCNLACTHCHVEASPKRTEELSKEICEQLIELINRFPQIQTVDLTGGAP EMNYGFKPLVEAAIKNNKEVIVRSNLTIYFVPGFEDIPQYCAENKLRIIASLPCYLEDNVDKMRGNGVYQKSIRALQWLN RLGYGQNQSMILDLVYNPPVPNSYKFALPANQKNLEQDYKSYLKEHFNVKFNQLFTITNLPIGRTRLFLENLKIHQPYLD FLEANFNGETIENLMCRNELSIDYLGNVYDCDFNQMENIPAKTSKGETITVAKLLEGNSLDIIEQVQTANYCYGCTAGCG SSCGGALV
Specific function: Unknown
COG id: COG0535
COG function: function code R; Predicted Fe-S oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37147; Mature: 37147
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 3.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKTAFIPFLAKLGKALTKKKITVLQINIGRRCNLACTHCHVEASPKRTEELSKEICEQL CCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH IELINRFPQIQTVDLTGGAPEMNYGFKPLVEAAIKNNKEVIVRSNLTIYFVPGFEDIPQY HHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCEEEEEECCHHHHHHH CAENKLRIIASLPCYLEDNVDKMRGNGVYQKSIRALQWLNRLGYGQNQSMILDLVYNPPV HHCCCEEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC PNSYKFALPANQKNLEQDYKSYLKEHFNVKFNQLFTITNLPIGRTRLFLENLKIHQPYLD CCCEEEEECCCHHHHHHHHHHHHHHHCCCEEHEEEEEECCCCCHHHHHHHHCCCCCHHHH FLEANFNGETIENLMCRNELSIDYLGNVYDCDFNQMENIPAKTSKGETITVAKLLEGNSL HHHCCCCCHHHHHHHHHCCCCHHHCCCEEECCHHHHCCCCCCCCCCCEEEEEEECCCCCH DIIEQVQTANYCYGCTAGCGSSCGGALV HHHHHHHHCCCEEECCCCCCCCCCCCCC >Mature Secondary Structure MRKTAFIPFLAKLGKALTKKKITVLQINIGRRCNLACTHCHVEASPKRTEELSKEICEQL CCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH IELINRFPQIQTVDLTGGAPEMNYGFKPLVEAAIKNNKEVIVRSNLTIYFVPGFEDIPQY HHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCEEEEEECCHHHHHHH CAENKLRIIASLPCYLEDNVDKMRGNGVYQKSIRALQWLNRLGYGQNQSMILDLVYNPPV HHCCCEEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC PNSYKFALPANQKNLEQDYKSYLKEHFNVKFNQLFTITNLPIGRTRLFLENLKIHQPYLD CCCEEEEECCCHHHHHHHHHHHHHHHCCCEEHEEEEEECCCCCHHHHHHHHCCCCCHHHH FLEANFNGETIENLMCRNELSIDYLGNVYDCDFNQMENIPAKTSKGETITVAKLLEGNSL HHHCCCCCHHHHHHHHHCCCCHHHCCCEEECCHHHHCCCCCCCCCCCEEEEEEECCCCCH DIIEQVQTANYCYGCTAGCGSSCGGALV HHHHHHHHCCCEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA