| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475644
Identifier: 113475644
GI number: 113475644
Start: 3089939
End: 3090757
Strand: Reverse
Name: 113475644
Synonym: Tery_1981
Alternate gene names: NA
Gene position: 3090757-3089939 (Counterclockwise)
Preceding gene: 113475645
Following gene: 113475643
Centisome position: 39.88
GC content: 40.9
Gene sequence:
>819_bases ATGGGAAATATTTGTATTATCGGACCGAGGAGTTCTGGCAAAACAACTTATCTGGCAGGACTGGCATATTGGCCGGATAC TCATAACCAAAATTTTGAAGTTACTCCTATCACAAAAGAGGCACAAAATTTAGTAAATCAAGCTGAAGATATTATTCTTA GTGGAGATTCTTTAAGGAGGACAGAGATAGATGGGTTCAAAATTAAAACTGTTTACGATTTACCGTTGTATTCTTTTCAA ATAGAAAAAAAGAGGAGGTGGCGCAAACCAGAGGAAATCAATTTAGTGGTTCGAGATTATCCAGGGGAAATTTTTGACGA TTTGGCCTCGGGAATTTCTAATGAAATACATCAAGAATTTCTCAATGAATGTTTAATTCCAGATATTGTTGGCTGTTTAT TGCTCCTCCATAAATGGGAGTTGGGCAACGACCAATTTTACAGGAGGATGATAGGGAGATTTATGGATTTAATGGACAGG CGCGATCGCCTAAAAAATTTGCGACTGGCAGTGGCAATGAGTAAATGCGAAAGGGGAGAAATTTGGCCTGGTCGTCTGGA CCCGGAATTGGACTTATTTGAAGTACATTTGCCCCGCACTAGAAAAATTTTGCGCCAGAGGATTCCTAAGAATAATTTAC AATTTTATGCCATATCTACTTTTGGGGTTCTGGAAAGGAACAATCCTCGTCCGAATCGTGCTGATGAGGAGGGGAGTCTG CGTTCTGTTTTACGATCGCCGCATCAGTGGCGACCCTACGGGCTGATTTCGCCCTTATATTGGTTAAGTACGGGTAAGAG GATGCGATCTGGTGTTTAA
Upstream 100 bases:
>100_bases TCAGTTCGCTGTTTTATTACCAGTATCTATGATCGTAGTTTGCTGGAGTTGCCCTGGATCTATTTAGCTAGTTATTTAGC TAATTAATGGAGGAGGAAAT
Downstream 100 bases:
>100_bases ATCTCTATTTAAAGATAAAGGTGAAGAATCTCAAGAGCAAAATTTATCTGGTGTCCTGCGGCTGATAGGCGATCGCTCTG CTGGTAAGACTACTTATATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MGNICIIGPRSSGKTTYLAGLAYWPDTHNQNFEVTPITKEAQNLVNQAEDIILSGDSLRRTEIDGFKIKTVYDLPLYSFQ IEKKRRWRKPEEINLVVRDYPGEIFDDLASGISNEIHQEFLNECLIPDIVGCLLLLHKWELGNDQFYRRMIGRFMDLMDR RDRLKNLRLAVAMSKCERGEIWPGRLDPELDLFEVHLPRTRKILRQRIPKNNLQFYAISTFGVLERNNPRPNRADEEGSL RSVLRSPHQWRPYGLISPLYWLSTGKRMRSGV
Sequences:
>Translated_272_residues MGNICIIGPRSSGKTTYLAGLAYWPDTHNQNFEVTPITKEAQNLVNQAEDIILSGDSLRRTEIDGFKIKTVYDLPLYSFQ IEKKRRWRKPEEINLVVRDYPGEIFDDLASGISNEIHQEFLNECLIPDIVGCLLLLHKWELGNDQFYRRMIGRFMDLMDR RDRLKNLRLAVAMSKCERGEIWPGRLDPELDLFEVHLPRTRKILRQRIPKNNLQFYAISTFGVLERNNPRPNRADEEGSL RSVLRSPHQWRPYGLISPLYWLSTGKRMRSGV >Mature_271_residues GNICIIGPRSSGKTTYLAGLAYWPDTHNQNFEVTPITKEAQNLVNQAEDIILSGDSLRRTEIDGFKIKTVYDLPLYSFQI EKKRRWRKPEEINLVVRDYPGEIFDDLASGISNEIHQEFLNECLIPDIVGCLLLLHKWELGNDQFYRRMIGRFMDLMDRR DRLKNLRLAVAMSKCERGEIWPGRLDPELDLFEVHLPRTRKILRQRIPKNNLQFYAISTFGVLERNNPRPNRADEEGSLR SVLRSPHQWRPYGLISPLYWLSTGKRMRSGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31786; Mature: 31655
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNICIIGPRSSGKTTYLAGLAYWPDTHNQNFEVTPITKEAQNLVNQAEDIILSGDSLRR CCCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHEEECCCCCCE TEIDGFKIKTVYDLPLYSFQIEKKRRWRKPEEINLVVRDYPGEIFDDLASGISNEIHQEF EECCCEEEEEEEECCCEEEEEHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH LNECLIPDIVGCLLLLHKWELGNDQFYRRMIGRFMDLMDRRDRLKNLRLAVAMSKCERGE HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IWPGRLDPELDLFEVHLPRTRKILRQRIPKNNLQFYAISTFGVLERNNPRPNRADEEGSL CCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHH RSVLRSPHQWRPYGLISPLYWLSTGKRMRSGV HHHHCCCCCCCCCCHHHHHHHHHCCHHHHCCC >Mature Secondary Structure GNICIIGPRSSGKTTYLAGLAYWPDTHNQNFEVTPITKEAQNLVNQAEDIILSGDSLRR CCEEEECCCCCCCEEEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHEEECCCCCCE TEIDGFKIKTVYDLPLYSFQIEKKRRWRKPEEINLVVRDYPGEIFDDLASGISNEIHQEF EECCCEEEEEEEECCCEEEEEHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH LNECLIPDIVGCLLLLHKWELGNDQFYRRMIGRFMDLMDRRDRLKNLRLAVAMSKCERGE HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC IWPGRLDPELDLFEVHLPRTRKILRQRIPKNNLQFYAISTFGVLERNNPRPNRADEEGSL CCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCHHH RSVLRSPHQWRPYGLISPLYWLSTGKRMRSGV HHHHCCCCCCCCCCHHHHHHHHHCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA