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The map label for this gene is dacB [C]

Identifier: 113475484

GI number: 113475484

Start: 2770453

End: 2771763

Strand: Reverse

Name: dacB [C]

Synonym: Tery_1815

Alternate gene names: 113475484

Gene position: 2771763-2770453 (Counterclockwise)

Preceding gene: 113475490

Following gene: 113475483

Centisome position: 35.76

GC content: 38.67

Gene sequence:

>1311_bases
ATGTGGGAATTGTTCAGCTACGGAGTAATACATCTGTGGTTAGAGATGGCAGGAATGCAAACTATCGGCCAAAATACTGT
AGCTATACTCAAATGGCAAGCAGGTATACCTGAACTAATTTCCCCTGAAAATTCAGATGAAACATTAACTTTAAAAGTAG
ATGAATACTTAGAAGGCTTAAAAACAAAAGGACTACTAACTCCTAATACTCAGGGTATTTGGATCCAGTCAGAACTAAGA
CCCCTCAATAGCCACGAAGGTACAACTCTCATTCCCAGTGCTTCTTTAACTAAAATTGCTACATCTTTAGCTGCACTTGA
AACTTGGGGAGCGCAACATCAGTTTGAAACCTTGATTAGTATTACTGGTCCAATTACCAATGGCATCTTACGAGGAGATT
TAGTTATTAATGGAGGTAGTGACCCCTATTTTGTCTGGGAAGAAGCGATCGCCCTAGGTAACGCTATACAAAAATTGGGC
ATTAATCAAGTTAGGGGCAATTTAGTTATAGTAGGTAATTTTTGGATGAATAACCAGTATAACCATGTGTTAGCTGGTAA
GTTTTTACAAGAAGGTATAAATTCAGCAACTTGGTCAAGAAATGTCAAAAGTATCTATAACCGAATGCCACGAGGAACAC
CAAAGCCAACAGTAGTAATTGCTGGTTCTGTTATATCCCAAAAATCTGTATCTCAAACAAAGCCCATGATTAGACACAAG
TCATTACCCCTAATATATATTCTTAAAACAATGAATGTAGAAAGTAAGAATAATTTAGCTCAGACATTGGCGAAAAGTTT
GGGAGGAGCAAAAGTTGTACAACAAAAAGCTGCTTGGGGTGCTGGAGTACCGGAAGCTGAAATACAATTAGTTAATGGTT
CTGGGTTGGGGTTAGGGAATAAAATTTCCCCAAGAGCTGTCACTGCAATGTTCATAGCTATTCAACGGCATTTACAAACT
TCTCAGTGGGTTATTGCTGATCTATTTCCGGTATCTGGGTACGATACAGGAACTTTAACCGATCAGTCAAGAACTATTCC
CCAAGGAACAGTGGTGAAGACTGGTACTTTGAATGATGTTATTGCTTTAGCGGGAGTTTTTCCAACCCGGGAACAGGGTT
TAGTTTGGTTTACGATAGTGAACCGCAGCCCTTACTGGCAGGAAACACGAGCAGAACAAGATAAGTTTTTACAACAATTA
GTTAATAGGTGGGGATCAACAATATCACCTAGAGCCATTACTCCTAAGATTAATGGCGATCGCTTAGGTTTAGGAGATAG
TAAGAGAAATCATTTTTTTTCGATAAATTAA

Upstream 100 bases:

>100_bases
TGGAAATATTGAATCAAATATTTTTTTTCATCCCCTTAAGAGAGTTAGTATCAATGAAGTTTGTTAAAATACAACAGTTT
TGAAAAGATTGGATTGAGTT

Downstream 100 bases:

>100_bases
ATTTGATAAAAGTTTGGAGTCAAGAACAGTGATATAATATTTCTGTTAGTTGTGAGAGAACTGAAAATTCTTAAAAGCTT
ACACTATAAAGCTTTCATGA

Product: peptidase S13, D-Ala-D-Ala carboxypeptidase C

Products: NA

Alternate protein names: D-Ala-D-Ala Carboxypeptidase 3 Family; D-Alanyl-D-Alanine Carboxypeptidase; D-Ala-D-Ala Carboxypeptidase; Carboxypeptidase; Serine-Type D-Ala-D-Ala Carboxypeptidase

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MWELFSYGVIHLWLEMAGMQTIGQNTVAILKWQAGIPELISPENSDETLTLKVDEYLEGLKTKGLLTPNTQGIWIQSELR
PLNSHEGTTLIPSASLTKIATSLAALETWGAQHQFETLISITGPITNGILRGDLVINGGSDPYFVWEEAIALGNAIQKLG
INQVRGNLVIVGNFWMNNQYNHVLAGKFLQEGINSATWSRNVKSIYNRMPRGTPKPTVVIAGSVISQKSVSQTKPMIRHK
SLPLIYILKTMNVESKNNLAQTLAKSLGGAKVVQQKAAWGAGVPEAEIQLVNGSGLGLGNKISPRAVTAMFIAIQRHLQT
SQWVIADLFPVSGYDTGTLTDQSRTIPQGTVVKTGTLNDVIALAGVFPTREQGLVWFTIVNRSPYWQETRAEQDKFLQQL
VNRWGSTISPRAITPKINGDRLGLGDSKRNHFFSIN

Sequences:

>Translated_436_residues
MWELFSYGVIHLWLEMAGMQTIGQNTVAILKWQAGIPELISPENSDETLTLKVDEYLEGLKTKGLLTPNTQGIWIQSELR
PLNSHEGTTLIPSASLTKIATSLAALETWGAQHQFETLISITGPITNGILRGDLVINGGSDPYFVWEEAIALGNAIQKLG
INQVRGNLVIVGNFWMNNQYNHVLAGKFLQEGINSATWSRNVKSIYNRMPRGTPKPTVVIAGSVISQKSVSQTKPMIRHK
SLPLIYILKTMNVESKNNLAQTLAKSLGGAKVVQQKAAWGAGVPEAEIQLVNGSGLGLGNKISPRAVTAMFIAIQRHLQT
SQWVIADLFPVSGYDTGTLTDQSRTIPQGTVVKTGTLNDVIALAGVFPTREQGLVWFTIVNRSPYWQETRAEQDKFLQQL
VNRWGSTISPRAITPKINGDRLGLGDSKRNHFFSIN
>Mature_436_residues
MWELFSYGVIHLWLEMAGMQTIGQNTVAILKWQAGIPELISPENSDETLTLKVDEYLEGLKTKGLLTPNTQGIWIQSELR
PLNSHEGTTLIPSASLTKIATSLAALETWGAQHQFETLISITGPITNGILRGDLVINGGSDPYFVWEEAIALGNAIQKLG
INQVRGNLVIVGNFWMNNQYNHVLAGKFLQEGINSATWSRNVKSIYNRMPRGTPKPTVVIAGSVISQKSVSQTKPMIRHK
SLPLIYILKTMNVESKNNLAQTLAKSLGGAKVVQQKAAWGAGVPEAEIQLVNGSGLGLGNKISPRAVTAMFIAIQRHLQT
SQWVIADLFPVSGYDTGTLTDQSRTIPQGTVVKTGTLNDVIALAGVFPTREQGLVWFTIVNRSPYWQETRAEQDKFLQQL
VNRWGSTISPRAITPKINGDRLGLGDSKRNHFFSIN

Specific function: Not Involved In Transpeptidation But Exclusively Catalyzes A Dd-Carboxypeptidase And Dd-Endopeptidase Reaction. [C]

COG id: COG2027

COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.16.4; 3.4.99.- [C]

Molecular weight: Translated: 47862; Mature: 47862

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWELFSYGVIHLWLEMAGMQTIGQNTVAILKWQAGIPELISPENSDETLTLKVDEYLEGL
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHCCCCCCCCEEEEEHHHHHHHH
KTKGLLTPNTQGIWIQSELRPLNSHEGTTLIPSASLTKIATSLAALETWGAQHQFETLIS
HHCCEECCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHE
ITGPITNGILRGDLVINGGSDPYFVWEEAIALGNAIQKLGINQVRGNLVIVGNFWMNNQY
ECCCHHCCEEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCHHHHCCCEEEEEEEEECCCC
NHVLAGKFLQEGINSATWSRNVKSIYNRMPRGTPKPTVVIAGSVISQKSVSQTKPMIRHK
CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
SLPLIYILKTMNVESKNNLAQTLAKSLGGAKVVQQKAAWGAGVPEAEIQLVNGSGLGLGN
CCCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
KISPRAVTAMFIAIQRHLQTSQWVIADLFPVSGYDTGTLTDQSRTIPQGTVVKTGTLNDV
CCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHH
IALAGVFPTREQGLVWFTIVNRSPYWQETRAEQDKFLQQLVNRWGSTISPRAITPKINGD
HHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCC
RLGLGDSKRNHFFSIN
EECCCCCCCCCEEEEC
>Mature Secondary Structure
MWELFSYGVIHLWLEMAGMQTIGQNTVAILKWQAGIPELISPENSDETLTLKVDEYLEGL
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHCCCCCCCCEEEEEHHHHHHHH
KTKGLLTPNTQGIWIQSELRPLNSHEGTTLIPSASLTKIATSLAALETWGAQHQFETLIS
HHCCEECCCCCCEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHE
ITGPITNGILRGDLVINGGSDPYFVWEEAIALGNAIQKLGINQVRGNLVIVGNFWMNNQY
ECCCHHCCEEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCHHHHCCCEEEEEEEEECCCC
NHVLAGKFLQEGINSATWSRNVKSIYNRMPRGTPKPTVVIAGSVISQKSVSQTKPMIRHK
CHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHC
SLPLIYILKTMNVESKNNLAQTLAKSLGGAKVVQQKAAWGAGVPEAEIQLVNGSGLGLGN
CCCEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
KISPRAVTAMFIAIQRHLQTSQWVIADLFPVSGYDTGTLTDQSRTIPQGTVVKTGTLNDV
CCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHH
IALAGVFPTREQGLVWFTIVNRSPYWQETRAEQDKFLQQLVNRWGSTISPRAITPKINGD
HHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCC
RLGLGDSKRNHFFSIN
EECCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: Preferential cleavage is (Ac)2-L-Lys-D-Ala D-Ala and Also transpeptidation of peptidyl-alanyl moieties that are N-acyl substituents of D-alanine [C]

General reaction: Hydrolase; Acting on peptide bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA