| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475483
Identifier: 113475483
GI number: 113475483
Start: 2767705
End: 2769240
Strand: Reverse
Name: 113475483
Synonym: Tery_1814
Alternate gene names: NA
Gene position: 2769240-2767705 (Counterclockwise)
Preceding gene: 113475484
Following gene: 113475482
Centisome position: 35.73
GC content: 28.58
Gene sequence:
>1536_bases ATGTTAAGCAGGGACCAGTTTGAACGCATTGAACAGGAAGAGTTAACTCCTATTCTCAAAAGAATTTTAAATAGAATATT AGATGGTAAAACAAATGAGGAGATCAGAACAGATGAAACAGTTTGGTTCAATTTAAATGTATATGAATATCTCAATGTAT ATAAGTATAATAACCCTAAAGATATAGTCGAACAGATCAATATAAAAATTGATAAAATAAAAGCTCAAAAAGACAAAAAT GATAATCAAATTAAAAAGCTCAAAAAACTCAAATTAGAGGTGGAAGATTTATATTATTTCCGAAAATCTTCATCTGGTAA AAGCAAAGCTTTACTTAGTAAGCATTTACGAGCTATATGTGATAAATTTAGGGTTAAAAGCACAAGAAATATAGAAGAAG ATTTATTCATTGTCATGAAATATTTCGTTGAATATAAGCAATATAGGATTTCTTCTGCAGCTAGAGCCAGGTTTGAATTA TTAGGGCGTATTCCCTACCCAGGAGGTTCTATTCCAACTTATTCTCCCTACTATCAATATCGATATTATAACCAAAATTG TTATTTAGAAAATCAATGTTTGAGTAAGATTGAAAATGCAGGAAAGGAAGCTATATTAATTCGGATTAAAGGTCCTCATT TGAGGGGTAAAACATCTTTCAAGAATAGGCTATTAAATAATAAATTAGTTACAAATAATAAGGCTAAAGTAGTTGATATT GATTTAGCAGAACATTTTAGTTCTTTCCAAAAAGAAAAATTTGAAACTTATGATTGGTTTTGTCGTGAACTTTGTCAACA GTTAGGTTTGAATGCAGAAGAGATACTTAAAGAATGGGGAAAAGCCATAGAAAGTGTTTATGATTGTACGTTCTTTGTTG AAAAACACATATTGTCTGAGATTAATCAGCCTATTTTTTTGAGCTTTGATAATTTCCATAAAATATTTGAATATTCCAAT TTTAATGAATTTGCGAGCATGTTACGATGTTGGCATGATAACAAAGCCAAAAATGATCATAAGTGGATAAATTTGGTATT AATTTTAATTTATTCAACATCTAATTATCCCAAGTCAAATATTAATAGCTCTCCTTTATTTAATTTAGGAGAAGGTTGGA ATTTAGGTGATTTTAGTTATCAAGAAATTAAGGAATTATCAGATAAGCATCAATTAGACTGGGGAGTTAAACAACTTGAA AAGTTAATGTCTTTTATCGGAGGACATCCATATTTAGTAAGACTAACTTTGTATCATGTCGCAATTGAAGGAAAATCTTT AGATAATATCTTAGCAAAAGCAACTACAAATGAGAGCATTTATAAAGATTATTTGATGCAACTTTACAACATTGTTAATG ATGCTAAATTAACAGATGACTTAAGAAAAATAGTTAATAGTCAAGATTATGTTAAGTTAGATTCGCCAATGTCAAATTTT CATTTACAGAATGCAGGTTTAATTATTCAGAATAATAACAAGGTTAAACCTCGTTGTCGTTTATATCGTGATTATTTTGT TAGTATTTTGCAATAG
Upstream 100 bases:
>100_bases GTTTATCATCTGCTCATTCCTAAACTTTTTTGATGCATCATACCAAACTAAACTTGGTATGAAATCTTATTTTCTGGTAA ATATATGGAGAGAGTAAGTA
Downstream 100 bases:
>100_bases AGGGCTTTGTTACAAAAAAAGACAAAAATAGTTAGGACTTAAACCACCTACGCCACCAGTTTCTAGGATAAAATAGGATT AAGTTATATATATGTATAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 511; Mature: 511
Protein sequence:
>511_residues MLSRDQFERIEQEELTPILKRILNRILDGKTNEEIRTDETVWFNLNVYEYLNVYKYNNPKDIVEQINIKIDKIKAQKDKN DNQIKKLKKLKLEVEDLYYFRKSSSGKSKALLSKHLRAICDKFRVKSTRNIEEDLFIVMKYFVEYKQYRISSAARARFEL LGRIPYPGGSIPTYSPYYQYRYYNQNCYLENQCLSKIENAGKEAILIRIKGPHLRGKTSFKNRLLNNKLVTNNKAKVVDI DLAEHFSSFQKEKFETYDWFCRELCQQLGLNAEEILKEWGKAIESVYDCTFFVEKHILSEINQPIFLSFDNFHKIFEYSN FNEFASMLRCWHDNKAKNDHKWINLVLILIYSTSNYPKSNINSSPLFNLGEGWNLGDFSYQEIKELSDKHQLDWGVKQLE KLMSFIGGHPYLVRLTLYHVAIEGKSLDNILAKATTNESIYKDYLMQLYNIVNDAKLTDDLRKIVNSQDYVKLDSPMSNF HLQNAGLIIQNNNKVKPRCRLYRDYFVSILQ
Sequences:
>Translated_511_residues MLSRDQFERIEQEELTPILKRILNRILDGKTNEEIRTDETVWFNLNVYEYLNVYKYNNPKDIVEQINIKIDKIKAQKDKN DNQIKKLKKLKLEVEDLYYFRKSSSGKSKALLSKHLRAICDKFRVKSTRNIEEDLFIVMKYFVEYKQYRISSAARARFEL LGRIPYPGGSIPTYSPYYQYRYYNQNCYLENQCLSKIENAGKEAILIRIKGPHLRGKTSFKNRLLNNKLVTNNKAKVVDI DLAEHFSSFQKEKFETYDWFCRELCQQLGLNAEEILKEWGKAIESVYDCTFFVEKHILSEINQPIFLSFDNFHKIFEYSN FNEFASMLRCWHDNKAKNDHKWINLVLILIYSTSNYPKSNINSSPLFNLGEGWNLGDFSYQEIKELSDKHQLDWGVKQLE KLMSFIGGHPYLVRLTLYHVAIEGKSLDNILAKATTNESIYKDYLMQLYNIVNDAKLTDDLRKIVNSQDYVKLDSPMSNF HLQNAGLIIQNNNKVKPRCRLYRDYFVSILQ >Mature_511_residues MLSRDQFERIEQEELTPILKRILNRILDGKTNEEIRTDETVWFNLNVYEYLNVYKYNNPKDIVEQINIKIDKIKAQKDKN DNQIKKLKKLKLEVEDLYYFRKSSSGKSKALLSKHLRAICDKFRVKSTRNIEEDLFIVMKYFVEYKQYRISSAARARFEL LGRIPYPGGSIPTYSPYYQYRYYNQNCYLENQCLSKIENAGKEAILIRIKGPHLRGKTSFKNRLLNNKLVTNNKAKVVDI DLAEHFSSFQKEKFETYDWFCRELCQQLGLNAEEILKEWGKAIESVYDCTFFVEKHILSEINQPIFLSFDNFHKIFEYSN FNEFASMLRCWHDNKAKNDHKWINLVLILIYSTSNYPKSNINSSPLFNLGEGWNLGDFSYQEIKELSDKHQLDWGVKQLE KLMSFIGGHPYLVRLTLYHVAIEGKSLDNILAKATTNESIYKDYLMQLYNIVNDAKLTDDLRKIVNSQDYVKLDSPMSNF HLQNAGLIIQNNNKVKPRCRLYRDYFVSILQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60450; Mature: 60450
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRDQFERIEQEELTPILKRILNRILDGKTNEEIRTDETVWFNLNVYEYLNVYKYNNPK CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCHH DIVEQINIKIDKIKAQKDKNDNQIKKLKKLKLEVEDLYYFRKSSSGKSKALLSKHLRAIC HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH DKFRVKSTRNIEEDLFIVMKYFVEYKQYRISSAARARFELLGRIPYPGGSIPTYSPYYQY HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE RYYNQNCYLENQCLSKIENAGKEAILIRIKGPHLRGKTSFKNRLLNNKLVTNNKAKVVDI EEECCCCEEHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCEEECCCCEEEEE DLAEHFSSFQKEKFETYDWFCRELCQQLGLNAEEILKEWGKAIESVYDCTFFVEKHILSE EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INQPIFLSFDNFHKIFEYSNFNEFASMLRCWHDNKAKNDHKWINLVLILIYSTSNYPKSN CCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEECCCCCCCCC INSSPLFNLGEGWNLGDFSYQEIKELSDKHQLDWGVKQLEKLMSFIGGHPYLVRLTLYHV CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHH AIEGKSLDNILAKATTNESIYKDYLMQLYNIVNDAKLTDDLRKIVNSQDYVKLDSPMSNF EECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCHHHC HLQNAGLIIQNNNKVKPRCRLYRDYFVSILQ EECCCCEEEECCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MLSRDQFERIEQEELTPILKRILNRILDGKTNEEIRTDETVWFNLNVYEYLNVYKYNNPK CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHCCCCHH DIVEQINIKIDKIKAQKDKNDNQIKKLKKLKLEVEDLYYFRKSSSGKSKALLSKHLRAIC HHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH DKFRVKSTRNIEEDLFIVMKYFVEYKQYRISSAARARFELLGRIPYPGGSIPTYSPYYQY HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE RYYNQNCYLENQCLSKIENAGKEAILIRIKGPHLRGKTSFKNRLLNNKLVTNNKAKVVDI EEECCCCEEHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCEEECCCCEEEEE DLAEHFSSFQKEKFETYDWFCRELCQQLGLNAEEILKEWGKAIESVYDCTFFVEKHILSE EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INQPIFLSFDNFHKIFEYSNFNEFASMLRCWHDNKAKNDHKWINLVLILIYSTSNYPKSN CCCCEEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEECCCCCCCCC INSSPLFNLGEGWNLGDFSYQEIKELSDKHQLDWGVKQLEKLMSFIGGHPYLVRLTLYHV CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHH AIEGKSLDNILAKATTNESIYKDYLMQLYNIVNDAKLTDDLRKIVNSQDYVKLDSPMSNF EECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEECCCHHHC HLQNAGLIIQNNNKVKPRCRLYRDYFVSILQ EECCCCEEEECCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA