| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475479
Identifier: 113475479
GI number: 113475479
Start: 2760356
End: 2760865
Strand: Reverse
Name: 113475479
Synonym: Tery_1810
Alternate gene names: NA
Gene position: 2760865-2760356 (Counterclockwise)
Preceding gene: 113475482
Following gene: 113475478
Centisome position: 35.62
GC content: 39.02
Gene sequence:
>510_bases ATGATACTCAGCCGTGATGCCCGGAAGTTACTAGCTCCAATATTGCTCTGCTTATTATTGTTTACATCTGCTTGTGGTGG AGCTAAACAACCTAGTCGTTTTGACCAGGCCCAACAACAAAGCAAAACAGAACGTCCTTCTAAAGCCAAACAAGTATCAG GTGGTAGTCTAAACAAGTACTTCCCATCATCAAGTGGTGGATATAAACTAAACTATGCTCAAGAGAAGAAAGGTTTTGCT CAAGCAAGTCTGAAAAAAGATGGTAAAGAAGTAGCAGTTATGTCTATCAATGATATTTCTGCTTCCTCCACTGCTGCCAA AAAATTCCAAAATAGTAGCCAAAAAATAGGAGGATATCCAGCAGTTGAGCAAGGTACAAAAACTACTGCAGTATTAGTAG ATAACCGTTTTCAGGTAAAAGCTCAATCAAAAGACCCCTCATTTACTGCAAATGATCGCGAAGCATGGCTAAAAAAATTT AACCTAAGAGGTCTGGCTAGTCTCAAATAA
Upstream 100 bases:
>100_bases ATAATTTCTTAAGTTATCAGAAAAAATTAAGTAAACACAAATTGCACAATTTTAAGAAAAAATTGGTAGGAGACATCTAA AAAATTGAGGAGAAATAAAA
Downstream 100 bases:
>100_bases AAAATCCTATCCCAACACTCGAAAAAAAGTGTCTACCTCTATTCACTTTTAACTTTTACCTTAAAAAAAAGTCAACAACC TCTCCTTCCAAGAGGATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 169; Mature: 169
Protein sequence:
>169_residues MILSRDARKLLAPILLCLLLFTSACGGAKQPSRFDQAQQQSKTERPSKAKQVSGGSLNKYFPSSSGGYKLNYAQEKKGFA QASLKKDGKEVAVMSINDISASSTAAKKFQNSSQKIGGYPAVEQGTKTTAVLVDNRFQVKAQSKDPSFTANDREAWLKKF NLRGLASLK
Sequences:
>Translated_169_residues MILSRDARKLLAPILLCLLLFTSACGGAKQPSRFDQAQQQSKTERPSKAKQVSGGSLNKYFPSSSGGYKLNYAQEKKGFA QASLKKDGKEVAVMSINDISASSTAAKKFQNSSQKIGGYPAVEQGTKTTAVLVDNRFQVKAQSKDPSFTANDREAWLKKF NLRGLASLK >Mature_169_residues MILSRDARKLLAPILLCLLLFTSACGGAKQPSRFDQAQQQSKTERPSKAKQVSGGSLNKYFPSSSGGYKLNYAQEKKGFA QASLKKDGKEVAVMSINDISASSTAAKKFQNSSQKIGGYPAVEQGTKTTAVLVDNRFQVKAQSKDPSFTANDREAWLKKF NLRGLASLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18341; Mature: 18341
Theoretical pI: Translated: 10.73; Mature: 10.73
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILSRDARKLLAPILLCLLLFTSACGGAKQPSRFDQAQQQSKTERPSKAKQVSGGSLNKY CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCC FPSSSGGYKLNYAQEKKGFAQASLKKDGKEVAVMSINDISASSTAAKKFQNSSQKIGGYP CCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHCCCCC AVEQGTKTTAVLVDNRFQVKAQSKDPSFTANDREAWLKKFNLRGLASLK CCCCCCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MILSRDARKLLAPILLCLLLFTSACGGAKQPSRFDQAQQQSKTERPSKAKQVSGGSLNKY CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCC FPSSSGGYKLNYAQEKKGFAQASLKKDGKEVAVMSINDISASSTAAKKFQNSSQKIGGYP CCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHCCCCC AVEQGTKTTAVLVDNRFQVKAQSKDPSFTANDREAWLKKFNLRGLASLK CCCCCCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA