Click here to switch to the map view.

The map label for this gene is ctaC [H]

Identifier: 113475450

GI number: 113475450

Start: 2713791

End: 2714810

Strand: Reverse

Name: ctaC [H]

Synonym: Tery_1779

Alternate gene names: 113475450

Gene position: 2714810-2713791 (Counterclockwise)

Preceding gene: 113475459

Following gene: 113475449

Centisome position: 35.03

GC content: 38.43

Gene sequence:

>1020_bases
ATGGAAGAAAAAGAAAAAGTACCAGTCTCAATAATAACTTTAGTAGTTGGTATAGTAGTCACCATAATTAGCTTATGGGC
AGGTCAAAATCATGGTCTGTTACCAGAGGCAGCATCTGAACAAGCGCCTCTGGTGGACAGATTTTTTGACATTATGTTTA
CTATAGCAACAGGTTTATTTATAATAGTAGAAGGCACAATAGTCTTTTGTATGATTAAATTTCGTCGGCGTCAAGGAGAC
GACAGCGATGGTGCCAACTTTAGAGAAAATTTACCATTAGAAATATTCTGGACAGCAATTCCATCCATAATTGTAATTGG
TCTTGGTATCTATAGTGTAGATATATATAGACAAATGGGTGGATTTGATCCAAATAGTACAATGGTAGCTCATCATCATG
CTCCATCTTACCAGGAAGTGGCGAAAATGAGAGGTTCTGCTATTGCTGCTCCCCTAATTGCAGATACTGAAGGAATGGAA
GCAACAAAAGTAGCTAGCAAGTATGGTTTTGGAGCAACTCCACAGGGGGCCGGAAAACAAGCTGATGTGATAGTAGACAT
CACCGGTATTCAATATGGTTGGTTAATGAACTATCCTGATAGTGGTGTTTTTGCAGGAGAATTACATATTCCTGTAAACA
AGGATATTCAAATTAACCTTTCTGCCCAAGATGTAATTCATTCTTTCTGGATACCGGCTTTCCGTTTGAAGCAAGATGCC
ATTCCCGGTAAAGAAACTCAACTGCGTTTTGTAGCCACTAAAATAGGAGAATATCCAGTTTATTGTGCCGAACTTTGTGG
TTCTTATCATGGAGCAATGAGAACAACTGTGGTGGTTCAAACCCAAGAAGAATACGCAGCTTGGATAGAAGAAAATACTT
TTGCTCAACAACAAGAATTGAATCAAGCTATAGCAGTAAACACTGCTGACTTATCCGACTCGGAATACCTCCAACCATAC
TCTGAGGAAATAGGAATTGATTCTGAAACCTTAAATCACATTAATCAAACTTATCACTAA

Upstream 100 bases:

>100_bases
TTGATTTTCTGAGAAATATCAAAGCAGTATCTAAAAGTGAAACCTGAGATTTGAATTAATTTGGTGAATTTCACCAGAAT
AACAAAGCAACCTAAGTAAA

Downstream 100 bases:

>100_bases
AAAAAAGTGCCCTGGGATTTGCTAAATAATCATTCAAGTCCCTCATTTAATAATAGCTAATTCATAATTCTCAAAAATAA
TTACGGATGACACAAACACA

Product: cytochrome c oxidase II

Products: NA

Alternate protein names: Cytochrome aa3 subunit 2; Cytochrome c oxidase polypeptide II; Oxidase aa(3) subunit 2 [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MEEKEKVPVSIITLVVGIVVTIISLWAGQNHGLLPEAASEQAPLVDRFFDIMFTIATGLFIIVEGTIVFCMIKFRRRQGD
DSDGANFRENLPLEIFWTAIPSIIVIGLGIYSVDIYRQMGGFDPNSTMVAHHHAPSYQEVAKMRGSAIAAPLIADTEGME
ATKVASKYGFGATPQGAGKQADVIVDITGIQYGWLMNYPDSGVFAGELHIPVNKDIQINLSAQDVIHSFWIPAFRLKQDA
IPGKETQLRFVATKIGEYPVYCAELCGSYHGAMRTTVVVQTQEEYAAWIEENTFAQQQELNQAIAVNTADLSDSEYLQPY
SEEIGIDSETLNHINQTYH

Sequences:

>Translated_339_residues
MEEKEKVPVSIITLVVGIVVTIISLWAGQNHGLLPEAASEQAPLVDRFFDIMFTIATGLFIIVEGTIVFCMIKFRRRQGD
DSDGANFRENLPLEIFWTAIPSIIVIGLGIYSVDIYRQMGGFDPNSTMVAHHHAPSYQEVAKMRGSAIAAPLIADTEGME
ATKVASKYGFGATPQGAGKQADVIVDITGIQYGWLMNYPDSGVFAGELHIPVNKDIQINLSAQDVIHSFWIPAFRLKQDA
IPGKETQLRFVATKIGEYPVYCAELCGSYHGAMRTTVVVQTQEEYAAWIEENTFAQQQELNQAIAVNTADLSDSEYLQPY
SEEIGIDSETLNHINQTYH
>Mature_339_residues
MEEKEKVPVSIITLVVGIVVTIISLWAGQNHGLLPEAASEQAPLVDRFFDIMFTIATGLFIIVEGTIVFCMIKFRRRQGD
DSDGANFRENLPLEIFWTAIPSIIVIGLGIYSVDIYRQMGGFDPNSTMVAHHHAPSYQEVAKMRGSAIAAPLIADTEGME
ATKVASKYGFGATPQGAGKQADVIVDITGIQYGWLMNYPDSGVFAGELHIPVNKDIQINLSAQDVIHSFWIPAFRLKQDA
IPGKETQLRFVATKIGEYPVYCAELCGSYHGAMRTTVVVQTQEEYAAWIEENTFAQQQELNQAIAVNTADLSDSEYLQPY
SEEIGIDSETLNHINQTYH

Specific function: Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B) [H]

COG id: COG1622

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase subunit 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001505
- InterPro:   IPR008972
- InterPro:   IPR014222
- InterPro:   IPR015964
- InterPro:   IPR002429
- InterPro:   IPR011759 [H]

Pfam domain/function: PF00116 COX2; PF02790 COX2_TM [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 37468; Mature: 37468

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS00078 COX2 ; PS50999 COX2_TM ; PS50857 COX2_CUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKEKVPVSIITLVVGIVVTIISLWAGQNHGLLPEAASEQAPLVDRFFDIMFTIATGLF
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
IIVEGTIVFCMIKFRRRQGDDSDGANFRENLPLEIFWTAIPSIIVIGLGIYSVDIYRQMG
EEEHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC
GFDPNSTMVAHHHAPSYQEVAKMRGSAIAAPLIADTEGMEATKVASKYGFGATPQGAGKQ
CCCCCCCEEEECCCCCHHHHHHHCCCCEECCCEECCCCCHHHHHHHHCCCCCCCCCCCCC
ADVIVDITGIQYGWLMNYPDSGVFAGELHIPVNKDIQINLSAQDVIHSFWIPAFRLKQDA
CCEEEEEECCEEEEEEECCCCCEEEEEEEECCCCCEEEEECHHHHHHHHCCCHHHHHHCC
IPGKETQLRFVATKIGEYPVYCAELCGSYHGAMRTTVVVQTQEEYAAWIEENTFAQQQEL
CCCCCHHEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHH
NQAIAVNTADLSDSEYLQPYSEEIGIDSETLNHINQTYH
HHHHEEEECCCCCCHHCCCHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MEEKEKVPVSIITLVVGIVVTIISLWAGQNHGLLPEAASEQAPLVDRFFDIMFTIATGLF
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
IIVEGTIVFCMIKFRRRQGDDSDGANFRENLPLEIFWTAIPSIIVIGLGIYSVDIYRQMG
EEEHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHC
GFDPNSTMVAHHHAPSYQEVAKMRGSAIAAPLIADTEGMEATKVASKYGFGATPQGAGKQ
CCCCCCCEEEECCCCCHHHHHHHCCCCEECCCEECCCCCHHHHHHHHCCCCCCCCCCCCC
ADVIVDITGIQYGWLMNYPDSGVFAGELHIPVNKDIQINLSAQDVIHSFWIPAFRLKQDA
CCEEEEEECCEEEEEEECCCCCEEEEEEEECCCCCEEEEECHHHHHHHHCCCHHHHHHCC
IPGKETQLRFVATKIGEYPVYCAELCGSYHGAMRTTVVVQTQEEYAAWIEENTFAQQQEL
CCCCCHHEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHH
NQAIAVNTADLSDSEYLQPYSEEIGIDSETLNHINQTYH
HHHHEEEECCCCCCHHCCCHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1659815; 8399373 [H]