| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475416
Identifier: 113475416
GI number: 113475416
Start: 2657404
End: 2657994
Strand: Reverse
Name: 113475416
Synonym: Tery_1744
Alternate gene names: NA
Gene position: 2657994-2657404 (Counterclockwise)
Preceding gene: 113475417
Following gene: 113475411
Centisome position: 34.3
GC content: 34.18
Gene sequence:
>591_bases ATGGTTGTAAAAAAGTCAGATTATGAAGCATTGCTGGCTGAGTATAGTAATTCGAAAGCTTTAATTGCACTACTTAAACA ATATAGATTGTATTTGGAAATGGTGCCTAGTTTTCGTCGGCCAGAAGATAGTTTAGTTACTATTCCTTTACCAATTATTC GGTTACGGGAAGAAGGTTATGAATCTGGGAAAACTGTTCCTTTACCCTGTGATTTAGGGATTTTTATGTGTGACCCGGAA TGGAAGGTTAAGACTGGGGTAGAAATTTTCATTTTTATTTATCGACCTCAGGAAGATTTTTCTGATATACTTACTCGTTG GCGAGAAACTCAGGTTTTATTAGATAGGGAATATGAGTGGGTAATGCCTCAAGTTCATAAACATATTTATTCTCAAGAGG CAGAGGAAATTTATCCTTTATTTGTTTTATTTTCCGAAACTCCAGAAAGAGTTAAAAGAGGATTAATGGGAGCAAATTTG CCTTTTGTAATTCAGTCAACTTATGATTCTCTAGAAGTAGAGGTTGAGCAATCAAATATTGAGATAAAGACAATTTTATC TCAGATAGATGATGGAGTTGATGATAGTTAA
Upstream 100 bases:
>100_bases TTGGTTAATGGAAACTGCAGTAGCAACATTTTGCTCTTGGGAAATTAATATTTTAACATATTCTTTTTCCTTGATTTTAA GTTCAATATGATTATTTATA
Downstream 100 bases:
>100_bases GAAACAGATAATGTATGATTAGGAGATATTTTCAAGTCTTGGATATCACGAACTAGAGGGACAGGAATAACTAAAGCAGC ATATAAGCTTGTTATTAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MVVKKSDYEALLAEYSNSKALIALLKQYRLYLEMVPSFRRPEDSLVTIPLPIIRLREEGYESGKTVPLPCDLGIFMCDPE WKVKTGVEIFIFIYRPQEDFSDILTRWRETQVLLDREYEWVMPQVHKHIYSQEAEEIYPLFVLFSETPERVKRGLMGANL PFVIQSTYDSLEVEVEQSNIEIKTILSQIDDGVDDS
Sequences:
>Translated_196_residues MVVKKSDYEALLAEYSNSKALIALLKQYRLYLEMVPSFRRPEDSLVTIPLPIIRLREEGYESGKTVPLPCDLGIFMCDPE WKVKTGVEIFIFIYRPQEDFSDILTRWRETQVLLDREYEWVMPQVHKHIYSQEAEEIYPLFVLFSETPERVKRGLMGANL PFVIQSTYDSLEVEVEQSNIEIKTILSQIDDGVDDS >Mature_196_residues MVVKKSDYEALLAEYSNSKALIALLKQYRLYLEMVPSFRRPEDSLVTIPLPIIRLREEGYESGKTVPLPCDLGIFMCDPE WKVKTGVEIFIFIYRPQEDFSDILTRWRETQVLLDREYEWVMPQVHKHIYSQEAEEIYPLFVLFSETPERVKRGLMGANL PFVIQSTYDSLEVEVEQSNIEIKTILSQIDDGVDDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22904; Mature: 22904
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVKKSDYEALLAEYSNSKALIALLKQYRLYLEMVPSFRRPEDSLVTIPLPIIRLREEGY CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHCCC ESGKTVPLPCDLGIFMCDPEWKVKTGVEIFIFIYRPQEDFSDILTRWRETQVLLDREYEW CCCCEECCCCCCCEEEECCCCCEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHH VMPQVHKHIYSQEAEEIYPLFVLFSETPERVKRGLMGANLPFVIQSTYDSLEVEVEQSNI HHHHHHHHHHHCCHHHHEEEEEEECCCHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCC EIKTILSQIDDGVDDS HHHHHHHHHCCCCCCC >Mature Secondary Structure MVVKKSDYEALLAEYSNSKALIALLKQYRLYLEMVPSFRRPEDSLVTIPLPIIRLREEGY CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHCCC ESGKTVPLPCDLGIFMCDPEWKVKTGVEIFIFIYRPQEDFSDILTRWRETQVLLDREYEW CCCCEECCCCCCCEEEECCCCCEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHH VMPQVHKHIYSQEAEEIYPLFVLFSETPERVKRGLMGANLPFVIQSTYDSLEVEVEQSNI HHHHHHHHHHHCCHHHHEEEEEEECCCHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCC EIKTILSQIDDGVDDS HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA