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The map label for this gene is pilC [H]

Identifier: 113475417

GI number: 113475417

Start: 2658181

End: 2659314

Strand: Reverse

Name: pilC [H]

Synonym: Tery_1745

Alternate gene names: 113475417

Gene position: 2659314-2658181 (Counterclockwise)

Preceding gene: 113475418

Following gene: 113475416

Centisome position: 34.31

GC content: 36.51

Gene sequence:

>1134_bases
ATGGCTGTTAATATAAAAAAGAAAAAACCTCAAAGTAAGTTAGAAAAACAGTTAGAGATAATAGAAGAAAAAATAAATAT
TGCTATAGCATCGGTGACGGTCAAAGATTTATCTATTTTTGCCCGTCAGTTTGCTGCAATGTTTAATGCTGGAGTACCGA
TGATTCGGTGTTTAAGAGTTTTAAAAGACCAAACTTCTAATGCTAAGATTAAGTATGCTCTTAAGCAAATAAGTGGAGAA
GTAGAAAAGGGTAATGAATTGTCAGAAGCAATGAAAGAACATCCTGCCTGTTTTGACGAATTATTTATAAGTATGGTAGC
TGCTGGAGAGGTAGGTGGTGTGCTTGATGAAGTTCTAGATCGTTTGGCAGTTATGTTGGAGAAAAATGCGAAGACAATAA
GTGAAATTAATTCAGCGATGTCTTATCCTAAAACTGTTATGTTTATTGCTTTGGCAGTGTTTTTTGGTATGACAACTTTT
CTGTTACCAACTTTTGCTGGTATTTTTGAACAAATTGGTACAGAGTTGCCAGCTTTTACTAAGTTTATGTTAAGTATAAG
TGAGTTTTGTAGGACTTGGCCTCCAATTCCCCAAGTCACTACTATAAGTGTAATTATTGCTATTTATATTATCTATTCGA
TAATTTATAAAACAGACCAAGGTAGACTGTTTTTTGACAAGGTTTTTCTCAAGCTTCCTATTTTTGGAGACATTCTGGAA
AAGTCGGCAGTAGCTCGTTTTTGTATGATTTTTGGTACTTTGACTCGTTCTGGAGTGCCGATGTTAAAGTCTCTGGAAAT
TGTCCGAAATGTGGCAGGAAATGAGGCGATCGCTCAGTCTATTGAGTATGCAAGGCAGGAAATTCAAGGTGGGGGTATGA
TTAGTTTGGCTTTGCAGGAGAAACAAGTGTTCCCTTCTTTGGCAATTCAAATGATGGCTATTGGTGAGGAAACTGGTGAA
TTGGATCAGATGCTGATGAAGGTGGGAGCTTTTTATGAAATTGAGGTGGAAGAGGCTGTTAAGTCTCTTTCAAGTATGTT
AGAACCAATAATGATCGTGGGTATTGGTGGAATGGTAGGTTCAATTTTGCTATCTATGTATTTACCTATGTTTGCGGTGT
TTGAAAGTCTCTAG

Upstream 100 bases:

>100_bases
ACAGGGTAATTGTTGCTTGTTTTTTTATCCTTCCACCTATCTTCCCTACTCTCTACCTCATCTGTTTGAAGTTAAATAAA
TAACACAAAGAAGGAATAAA

Downstream 100 bases:

>100_bases
GGAATAGGGAGTAGGAACTCAGAACTCAGAATATAAAAAGATTTTGCTCTATTTTAAGTATCTGATGGTGGTGAATTGTA
ATGGTTTTGGTTAATGGAAA

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MAVNIKKKKPQSKLEKQLEIIEEKINIAIASVTVKDLSIFARQFAAMFNAGVPMIRCLRVLKDQTSNAKIKYALKQISGE
VEKGNELSEAMKEHPACFDELFISMVAAGEVGGVLDEVLDRLAVMLEKNAKTISEINSAMSYPKTVMFIALAVFFGMTTF
LLPTFAGIFEQIGTELPAFTKFMLSISEFCRTWPPIPQVTTISVIIAIYIIYSIIYKTDQGRLFFDKVFLKLPIFGDILE
KSAVARFCMIFGTLTRSGVPMLKSLEIVRNVAGNEAIAQSIEYARQEIQGGGMISLALQEKQVFPSLAIQMMAIGEETGE
LDQMLMKVGAFYEIEVEEAVKSLSSMLEPIMIVGIGGMVGSILLSMYLPMFAVFESL

Sequences:

>Translated_377_residues
MAVNIKKKKPQSKLEKQLEIIEEKINIAIASVTVKDLSIFARQFAAMFNAGVPMIRCLRVLKDQTSNAKIKYALKQISGE
VEKGNELSEAMKEHPACFDELFISMVAAGEVGGVLDEVLDRLAVMLEKNAKTISEINSAMSYPKTVMFIALAVFFGMTTF
LLPTFAGIFEQIGTELPAFTKFMLSISEFCRTWPPIPQVTTISVIIAIYIIYSIIYKTDQGRLFFDKVFLKLPIFGDILE
KSAVARFCMIFGTLTRSGVPMLKSLEIVRNVAGNEAIAQSIEYARQEIQGGGMISLALQEKQVFPSLAIQMMAIGEETGE
LDQMLMKVGAFYEIEVEEAVKSLSSMLEPIMIVGIGGMVGSILLSMYLPMFAVFESL
>Mature_376_residues
AVNIKKKKPQSKLEKQLEIIEEKINIAIASVTVKDLSIFARQFAAMFNAGVPMIRCLRVLKDQTSNAKIKYALKQISGEV
EKGNELSEAMKEHPACFDELFISMVAAGEVGGVLDEVLDRLAVMLEKNAKTISEINSAMSYPKTVMFIALAVFFGMTTFL
LPTFAGIFEQIGTELPAFTKFMLSISEFCRTWPPIPQVTTISVIIAIYIIYSIIYKTDQGRLFFDKVFLKLPIFGDILEK
SAVARFCMIFGTLTRSGVPMLKSLEIVRNVAGNEAIAQSIEYARQEIQGGGMISLALQEKQVFPSLAIQMMAIGEETGEL
DQMLMKVGAFYEIEVEEAVKSLSSMLEPIMIVGIGGMVGSILLSMYLPMFAVFESL

Specific function: Involved in the translocation of the type IV pilin (pilA) [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=341, Percent_Identity=26.099706744868, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1786295, Length=336, Percent_Identity=25.297619047619, Blast_Score=130, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 41722; Mature: 41591

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVNIKKKKPQSKLEKQLEIIEEKINIAIASVTVKDLSIFARQFAAMFNAGVPMIRCLRV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LKDQTSNAKIKYALKQISGEVEKGNELSEAMKEHPACFDELFISMVAAGEVGGVLDEVLD
HHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLAVMLEKNAKTISEINSAMSYPKTVMFIALAVFFGMTTFLLPTFAGIFEQIGTELPAFT
HHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KFMLSISEFCRTWPPIPQVTTISVIIAIYIIYSIIYKTDQGRLFFDKVFLKLPIFGDILE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHH
KSAVARFCMIFGTLTRSGVPMLKSLEIVRNVAGNEAIAQSIEYARQEIQGGGMISLALQE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEHHH
KQVFPSLAIQMMAIGEETGELDQMLMKVGAFYEIEVEEAVKSLSSMLEPIMIVGIGGMVG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
SILLSMYLPMFAVFESL
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1971619; 10984043 [H]