| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475408
Identifier: 113475408
GI number: 113475408
Start: 2640087
End: 2640503
Strand: Reverse
Name: 113475408
Synonym: Tery_1734
Alternate gene names: NA
Gene position: 2640503-2640087 (Counterclockwise)
Preceding gene: 113475409
Following gene: 113475407
Centisome position: 34.07
GC content: 40.77
Gene sequence:
>417_bases ATGTGGCTGCCGAGTTGTTATAGAATATATGGAAATATAAAAAAATTGACTGACGGGAGGATACAAGTGACAAAATTAGT TAAGTTTCAGTTAGATGATGATGATGAGTCTTTTGTCTATGTGGAAGTGGATGAAAAGCTACCAGTCAGTAGCAATGAAG ATGAAGATGAGGAGTTAATTGGCATTGGGGATGAGGTCGCTCAACAGGCTAAACAAACACTGGGAAAGGCACTTTCTAGT ATTAAGCCGGTGGCCAACGCAATTATCAAAAAGGTTCAGGACTTAAATCAACCGGCTGATGCTGTAGAGGTGAAGTTTGG GATAAAAATGAGTGGTGAACTGGGAGCTGTTATTGCATCAGGTAGCGCGGAGGTTAACTATGAAATTACTCTGAAATGGA ATAAGACGGAGGGTTAG
Upstream 100 bases:
>100_bases CATTTGTTTTGAATGGGATGGCAGGATATTTTTTAGTTTTTACTCTTATCTTTACGGGCAGTTTTAACACCAACATAAGA ATAAATGAAATGACATCTCA
Downstream 100 bases:
>100_bases TAACGGCAAAGTTGGCTATGGATAACTATAGAGTTTAAAAAGTTGGAAGTGGATAAGGTTTAATGGTTTTAGAATTATCT ATTGTTAGGATATTTAAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 138; Mature: 138
Protein sequence:
>138_residues MWLPSCYRIYGNIKKLTDGRIQVTKLVKFQLDDDDESFVYVEVDEKLPVSSNEDEDEELIGIGDEVAQQAKQTLGKALSS IKPVANAIIKKVQDLNQPADAVEVKFGIKMSGELGAVIASGSAEVNYEITLKWNKTEG
Sequences:
>Translated_138_residues MWLPSCYRIYGNIKKLTDGRIQVTKLVKFQLDDDDESFVYVEVDEKLPVSSNEDEDEELIGIGDEVAQQAKQTLGKALSS IKPVANAIIKKVQDLNQPADAVEVKFGIKMSGELGAVIASGSAEVNYEITLKWNKTEG >Mature_138_residues MWLPSCYRIYGNIKKLTDGRIQVTKLVKFQLDDDDESFVYVEVDEKLPVSSNEDEDEELIGIGDEVAQQAKQTLGKALSS IKPVANAIIKKVQDLNQPADAVEVKFGIKMSGELGAVIASGSAEVNYEITLKWNKTEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15220; Mature: 15220
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWLPSCYRIYGNIKKLTDGRIQVTKLVKFQLDDDDESFVYVEVDEKLPVSSNEDEDEELI CCCCHHHHHHCCHHHCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCHHEE GIGDEVAQQAKQTLGKALSSIKPVANAIIKKVQDLNQPADAVEVKFGIKMSGELGAVIAS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECEEECCCCEEEEEC GSAEVNYEITLKWNKTEG CCCEEEEEEEEEECCCCC >Mature Secondary Structure MWLPSCYRIYGNIKKLTDGRIQVTKLVKFQLDDDDESFVYVEVDEKLPVSSNEDEDEELI CCCCHHHHHHCCHHHCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCHHEE GIGDEVAQQAKQTLGKALSSIKPVANAIIKKVQDLNQPADAVEVKFGIKMSGELGAVIAS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECEEECCCCEEEEEC GSAEVNYEITLKWNKTEG CCCEEEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA