| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475407
Identifier: 113475407
GI number: 113475407
Start: 2638093
End: 2640024
Strand: Reverse
Name: 113475407
Synonym: Tery_1733
Alternate gene names: NA
Gene position: 2640024-2638093 (Counterclockwise)
Preceding gene: 113475408
Following gene: 113475406
Centisome position: 34.06
GC content: 35.97
Gene sequence:
>1932_bases ATGGTTTTAGAATTATCTATTGTTAGGATATTTAAATCTGGAGGTGGTGTCGCTGGCTCTGGTTTTTTGGTTTCTAATGA GTATATTTTAACTTGTGCTCATGTAGTGGCTTATTGTTTAGATACTCCTAAAAAAACTGCACATATAATTATGAGGCAGA AAGAAATTCCTGATGAAATTATTGAGGTTAATTTTCCTATTTTTGAGAAAGGTAAGATAGGTGAAAAACTTGAGACAAAA GTGACTTTTTGGCGACCTCTAAATGATCAGGAAAATATACAAGATATTGCAGTATTAAAACTAATAAATTCTGATCTACT TCCCGAAGATGCTAAACCAATTAATTTAATTCAAATAGGAAATCAATCTCTTAAGGAAAATGAGTTTGAAGCATTAGGTT TCCCAAAAAAAGGGAGCGATGGGGAGTGGGCTACTGGAAAATTGATGGGACCAATAGGCCGAGGTCTTATCCAACTTGAG GGTACTAAACAGACAGGGCTTCGCTTGGAGTCAGGGTTTAGTGGTACTGCTATCTGGGACAAAAATCTTCAGGGTGTTGT GGGTATGGCGGTAAAAGCAGACCAGGAACGCCCTGAGGCTAAAGTGGCTTTTATGATTCCCACGGACCTAATACTTCAAG TTGGGGATTTGGCCACGGTTTGTCGCGTTGATGGTAGGATACAAGGAGCGATCGCTATTTTGGAAAATTATTTTGAAGAT TATACCACAGAAATACGCTATGCTTACAACCTATCTTTGCCAGAAATTTCTATTCCTTTAAGTTCTGGGAAATCTCTAGA TGAGTACCCTGGATCTTTGAATGAGATGATTCAAAATTTGGATGACCGGACAAAGGAAAATTATTCTTTGCTGGAGAGAT TTATCTGTTTTTTATTACTGCATCTTGAGGATTTAAAAAAACCTTCTGAGCTTTGCCAGAAATTAACAGAATGGTTGGAA AAATATTCGCAAAATATTGAAGATTTGAAGGCTGTTTTAAGAAAAGAGAAAGCTCTGAAAAATCAGGAAAATTTTCAGAT TAAACAACCAGAACCTTATCTATTAGTAGCTGCTATTGAAAAGAGTAAGGGTTTTATTTTGAAGGCATGGCTAATTGAAA ATCCTCAAAATTATACTCCGGAAAATCCTCAAGGTTTCCATTCTTTTATTGATGAAGAAAATGTTCTTATGAATGCAAAA GGAACTATAGTTAGTAATAAAAATACTTCGGAGTTTAACCAAGCTAAAAATTTGACTGAATTATTACAGTTCTTTTGGGC TGATGTTTCGGAACGTTATGATTTTAATCTAGAGAAAATTGCAATATTTTTGCCTTATAAATTAATTGACCGGGATATTA AGCCGGTAGATCAATATATAAGTGATCCGAATATACCTGAGTATTTTCAAACTTTATTGGGAGAACAGTGTGAAATCACT CTCAGGTTTTCAGAACGCCTTAGGCTGTCTGGAAATTCTAATGCTGAATTAAATAAATTTAACCAAAAGTGGCGATCGCT AACTAGCAGACAAAGTGCAAGAGTAATTGATATTTTTCATCCTTCGGCTACTAGTGGTAATAGGAAGAAGTTTTTTCGAC AAATTTTTGCTGACGATGTGGCGGCAGTAAGATTAACAGAAGTGCTGCAACCAGAGAAACGAGAATCAGTTATGGAAGCT TTTTACTATGCTGGAATTCCTGTGGCGCTATGGATGAGGCCAGAAGCAGAAAATATTGACTGTGCTGAGGAACTGCAAAA TATCTGTAACGCTTGTAACTCTTTGTCAAATTTACCTAAAGCTATAAAAGCAAAACGTTCTGAAGCTTGGGAACAAGATA TTGACAGACATATTGGTAATCACTTATCATTACTTTGGGAGGATCCTGATATTGTTCCACCTGTTAATGAACTGAGGATG TTGGAGTCATGA
Upstream 100 bases:
>100_bases ATGAAATTACTCTGAAATGGAATAAGACGGAGGGTTAGTAACGGCAAAGTTGGCTATGGATAACTATAGAGTTTAAAAAG TTGGAAGTGGATAAGGTTTA
Downstream 100 bases:
>100_bases ATAACTGGGAAATTTTTAAGGAAAACACAGAACCTCATGATGGTATTCAAAATTTGCCACCTCCTCCTAGTTGGCGACCT TTTGGTCAAGAAAACAGACC
Product: peptidase S1 and S6, chymotrypsin/Hap
Products: NA
Alternate protein names: WD-40 Repeat-Containing Protein
Number of amino acids: Translated: 643; Mature: 643
Protein sequence:
>643_residues MVLELSIVRIFKSGGGVAGSGFLVSNEYILTCAHVVAYCLDTPKKTAHIIMRQKEIPDEIIEVNFPIFEKGKIGEKLETK VTFWRPLNDQENIQDIAVLKLINSDLLPEDAKPINLIQIGNQSLKENEFEALGFPKKGSDGEWATGKLMGPIGRGLIQLE GTKQTGLRLESGFSGTAIWDKNLQGVVGMAVKADQERPEAKVAFMIPTDLILQVGDLATVCRVDGRIQGAIAILENYFED YTTEIRYAYNLSLPEISIPLSSGKSLDEYPGSLNEMIQNLDDRTKENYSLLERFICFLLLHLEDLKKPSELCQKLTEWLE KYSQNIEDLKAVLRKEKALKNQENFQIKQPEPYLLVAAIEKSKGFILKAWLIENPQNYTPENPQGFHSFIDEENVLMNAK GTIVSNKNTSEFNQAKNLTELLQFFWADVSERYDFNLEKIAIFLPYKLIDRDIKPVDQYISDPNIPEYFQTLLGEQCEIT LRFSERLRLSGNSNAELNKFNQKWRSLTSRQSARVIDIFHPSATSGNRKKFFRQIFADDVAAVRLTEVLQPEKRESVMEA FYYAGIPVALWMRPEAENIDCAEELQNICNACNSLSNLPKAIKAKRSEAWEQDIDRHIGNHLSLLWEDPDIVPPVNELRM LES
Sequences:
>Translated_643_residues MVLELSIVRIFKSGGGVAGSGFLVSNEYILTCAHVVAYCLDTPKKTAHIIMRQKEIPDEIIEVNFPIFEKGKIGEKLETK VTFWRPLNDQENIQDIAVLKLINSDLLPEDAKPINLIQIGNQSLKENEFEALGFPKKGSDGEWATGKLMGPIGRGLIQLE GTKQTGLRLESGFSGTAIWDKNLQGVVGMAVKADQERPEAKVAFMIPTDLILQVGDLATVCRVDGRIQGAIAILENYFED YTTEIRYAYNLSLPEISIPLSSGKSLDEYPGSLNEMIQNLDDRTKENYSLLERFICFLLLHLEDLKKPSELCQKLTEWLE KYSQNIEDLKAVLRKEKALKNQENFQIKQPEPYLLVAAIEKSKGFILKAWLIENPQNYTPENPQGFHSFIDEENVLMNAK GTIVSNKNTSEFNQAKNLTELLQFFWADVSERYDFNLEKIAIFLPYKLIDRDIKPVDQYISDPNIPEYFQTLLGEQCEIT LRFSERLRLSGNSNAELNKFNQKWRSLTSRQSARVIDIFHPSATSGNRKKFFRQIFADDVAAVRLTEVLQPEKRESVMEA FYYAGIPVALWMRPEAENIDCAEELQNICNACNSLSNLPKAIKAKRSEAWEQDIDRHIGNHLSLLWEDPDIVPPVNELRM LES >Mature_643_residues MVLELSIVRIFKSGGGVAGSGFLVSNEYILTCAHVVAYCLDTPKKTAHIIMRQKEIPDEIIEVNFPIFEKGKIGEKLETK VTFWRPLNDQENIQDIAVLKLINSDLLPEDAKPINLIQIGNQSLKENEFEALGFPKKGSDGEWATGKLMGPIGRGLIQLE GTKQTGLRLESGFSGTAIWDKNLQGVVGMAVKADQERPEAKVAFMIPTDLILQVGDLATVCRVDGRIQGAIAILENYFED YTTEIRYAYNLSLPEISIPLSSGKSLDEYPGSLNEMIQNLDDRTKENYSLLERFICFLLLHLEDLKKPSELCQKLTEWLE KYSQNIEDLKAVLRKEKALKNQENFQIKQPEPYLLVAAIEKSKGFILKAWLIENPQNYTPENPQGFHSFIDEENVLMNAK GTIVSNKNTSEFNQAKNLTELLQFFWADVSERYDFNLEKIAIFLPYKLIDRDIKPVDQYISDPNIPEYFQTLLGEQCEIT LRFSERLRLSGNSNAELNKFNQKWRSLTSRQSARVIDIFHPSATSGNRKKFFRQIFADDVAAVRLTEVLQPEKRESVMEA FYYAGIPVALWMRPEAENIDCAEELQNICNACNSLSNLPKAIKAKRSEAWEQDIDRHIGNHLSLLWEDPDIVPPVNELRM LES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73194; Mature: 73194
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLELSIVRIFKSGGGVAGSGFLVSNEYILTCAHVVAYCLDTPKKTAHIIMRQKEIPDEI CEEEEEEHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH IEVNFPIFEKGKIGEKLETKVTFWRPLNDQENIQDIAVLKLINSDLLPEDAKPINLIQIG HCCCCCEECCCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEC NQSLKENEFEALGFPKKGSDGEWATGKLMGPIGRGLIQLEGTKQTGLRLESGFSGTAIWD CCHHCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCEEEECCCCCCCCEEECCCCCCEEEC KNLQGVVGMAVKADQERPEAKVAFMIPTDLILQVGDLATVCRVDGRIQGAIAILENYFED CCCCCHHHHEEECCCCCCCCEEEEEECHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHH YTTEIRYAYNLSLPEISIPLSSGKSLDEYPGSLNEMIQNLDDRTKENYSLLERFICFLLL HHHEEEEEEECCCCCEEEECCCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH HLEDLKKPSELCQKLTEWLEKYSQNIEDLKAVLRKEKALKNQENFQIKQPEPYLLVAAIE HHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEEE KSKGFILKAWLIENPQNYTPENPQGFHSFIDEENVLMNAKGTIVSNKNTSEFNQAKNLTE CCCCEEEEEEEECCCCCCCCCCCCHHHHHCCCCCEEEECCCCEEECCCCHHHHHHHHHHH LLQFFWADVSERYDFNLEKIAIFLPYKLIDRDIKPVDQYISDPNIPEYFQTLLGEQCEIT HHHHHHHHHHHHCCCCHHHEEEEECHHHHCCCCHHHHHHCCCCCCHHHHHHHCCCCEEEE LRFSERLRLSGNSNAELNKFNQKWRSLTSRQSARVIDIFHPSATSGNRKKFFRQIFADDV EEEECEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH AAVRLTEVLQPEKRESVMEAFYYAGIPVALWMRPEAENIDCAEELQNICNACNSLSNLPK HHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCHH AIKAKRSEAWEQDIDRHIGNHLSLLWEDPDIVPPVNELRMLES HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCC >Mature Secondary Structure MVLELSIVRIFKSGGGVAGSGFLVSNEYILTCAHVVAYCLDTPKKTAHIIMRQKEIPDEI CEEEEEEHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH IEVNFPIFEKGKIGEKLETKVTFWRPLNDQENIQDIAVLKLINSDLLPEDAKPINLIQIG HCCCCCEECCCCCCCHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEC NQSLKENEFEALGFPKKGSDGEWATGKLMGPIGRGLIQLEGTKQTGLRLESGFSGTAIWD CCHHCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCEEEECCCCCCCCEEECCCCCCEEEC KNLQGVVGMAVKADQERPEAKVAFMIPTDLILQVGDLATVCRVDGRIQGAIAILENYFED CCCCCHHHHEEECCCCCCCCEEEEEECHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHH YTTEIRYAYNLSLPEISIPLSSGKSLDEYPGSLNEMIQNLDDRTKENYSLLERFICFLLL HHHEEEEEEECCCCCEEEECCCCCCCHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH HLEDLKKPSELCQKLTEWLEKYSQNIEDLKAVLRKEKALKNQENFQIKQPEPYLLVAAIE HHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEEE KSKGFILKAWLIENPQNYTPENPQGFHSFIDEENVLMNAKGTIVSNKNTSEFNQAKNLTE CCCCEEEEEEEECCCCCCCCCCCCHHHHHCCCCCEEEECCCCEEECCCCHHHHHHHHHHH LLQFFWADVSERYDFNLEKIAIFLPYKLIDRDIKPVDQYISDPNIPEYFQTLLGEQCEIT HHHHHHHHHHHHCCCCHHHEEEEECHHHHCCCCHHHHHHCCCCCCHHHHHHHCCCCEEEE LRFSERLRLSGNSNAELNKFNQKWRSLTSRQSARVIDIFHPSATSGNRKKFFRQIFADDV EEEECEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH AAVRLTEVLQPEKRESVMEAFYYAGIPVALWMRPEAENIDCAEELQNICNACNSLSNLPK HHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCHH AIKAKRSEAWEQDIDRHIGNHLSLLWEDPDIVPPVNELRMLES HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA