| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474650
Identifier: 113474650
GI number: 113474650
Start: 1305631
End: 1306536
Strand: Reverse
Name: 113474650
Synonym: Tery_0824
Alternate gene names: NA
Gene position: 1306536-1305631 (Counterclockwise)
Preceding gene: 113474651
Following gene: 113474649
Centisome position: 16.86
GC content: 34.33
Gene sequence:
>906_bases ATGTTTAAATCTATATTTAAACCCAGAAATAATCAAGAATTAAAAGTCGAAAATCATTCTGGAGTTTTACGGGTAATAGG CGATCGCGCCGCGGGAAAAACGACTTATATGGCTGCTTTAGCTAGGTGGCCAAATGCCGATATATCGAGTCCAGTCGAGT TAGTTACTCCAGCAAATAAAGACGGAGAATCTTTAATTAGACAGGCACAAGACTTGATAGAAAAAGGATTACAAATTGAA CCAACTCGTTTAGCTAGTGACGTGCTAGAAATTAAGGATTATAGTTTAAGAATTGTTCTGAAAAAAACAGATAATTCCAA ATTTTCAAACACCGTTTTAAACTTAGATATTAGTTGCAAAGATTATTCTGGAGAATTTTTCAGCGATGTACTTCAAGAAA CAAATAGTCAGCTACTCCGAGACTACTTAAATGATTGTTTTCCCGCCACAGGAATTATGTTAATGATTGATGGTACAACT CATCGTAAAGACTTAGAATATGCCAGAGGAGTTGATCAACTTTTAGTAGCATTAGCAGGGGGAAATATTTTCAGTCAAAA ACGGCGAATTGCTCTAGTATTAACTAAGTGTGAATTAGCAGATTTATGGGGAAATAGACACAAACCAAAATTTTTGTTAA AAGCCAGATTTCCTACTATTTTTAAAAGATTAGAATCTTGGCAAGATTTAGGAATGGGAAATGTGGAATATTTTACAACT TCTGCTTTTGGCGCAACAAGAAATCAAAATAAATATTTTCAACCAAATTCTGAAGAAATTTATCGCGATCGTAGCGGGGT AGCATCTGTATTAGGAGACTCAAAAAAATGGCGACCTTTTGGTTTAGTTTCTCCTATATATTGGATTTGTACAGGTAAGC GTAATTTACATTTAGAGCAAGATTAA
Upstream 100 bases:
>100_bases CCTTTATACTGGTTAAGTAAAGGTCAGTATATGAAAAGTTAAAAGTCATCCATTCAAAAGTTCAAATCAGTTAAAATCAA AAAAATTTTAATTATTTAGA
Downstream 100 bases:
>100_bases TACTAGTTTGTGAAAGGCAAAATTTAAAATTTAAAAGTTAAAAGCAAAAACTAAAAAATTAAAAGTTAGGTGATATTTTA GATACATCTATCCACCCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MFKSIFKPRNNQELKVENHSGVLRVIGDRAAGKTTYMAALARWPNADISSPVELVTPANKDGESLIRQAQDLIEKGLQIE PTRLASDVLEIKDYSLRIVLKKTDNSKFSNTVLNLDISCKDYSGEFFSDVLQETNSQLLRDYLNDCFPATGIMLMIDGTT HRKDLEYARGVDQLLVALAGGNIFSQKRRIALVLTKCELADLWGNRHKPKFLLKARFPTIFKRLESWQDLGMGNVEYFTT SAFGATRNQNKYFQPNSEEIYRDRSGVASVLGDSKKWRPFGLVSPIYWICTGKRNLHLEQD
Sequences:
>Translated_301_residues MFKSIFKPRNNQELKVENHSGVLRVIGDRAAGKTTYMAALARWPNADISSPVELVTPANKDGESLIRQAQDLIEKGLQIE PTRLASDVLEIKDYSLRIVLKKTDNSKFSNTVLNLDISCKDYSGEFFSDVLQETNSQLLRDYLNDCFPATGIMLMIDGTT HRKDLEYARGVDQLLVALAGGNIFSQKRRIALVLTKCELADLWGNRHKPKFLLKARFPTIFKRLESWQDLGMGNVEYFTT SAFGATRNQNKYFQPNSEEIYRDRSGVASVLGDSKKWRPFGLVSPIYWICTGKRNLHLEQD >Mature_301_residues MFKSIFKPRNNQELKVENHSGVLRVIGDRAAGKTTYMAALARWPNADISSPVELVTPANKDGESLIRQAQDLIEKGLQIE PTRLASDVLEIKDYSLRIVLKKTDNSKFSNTVLNLDISCKDYSGEFFSDVLQETNSQLLRDYLNDCFPATGIMLMIDGTT HRKDLEYARGVDQLLVALAGGNIFSQKRRIALVLTKCELADLWGNRHKPKFLLKARFPTIFKRLESWQDLGMGNVEYFTT SAFGATRNQNKYFQPNSEEIYRDRSGVASVLGDSKKWRPFGLVSPIYWICTGKRNLHLEQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34190; Mature: 34190
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKSIFKPRNNQELKVENHSGVLRVIGDRAAGKTTYMAALARWPNADISSPVELVTPANK CCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCC DGESLIRQAQDLIEKGLQIEPTRLASDVLEIKDYSLRIVLKKTDNSKFSNTVLNLDISCK CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEEEEC DYSGEFFSDVLQETNSQLLRDYLNDCFPATGIMLMIDGTTHRKDLEYARGVDQLLVALAG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHCHHHHHHHHHC GNIFSQKRRIALVLTKCELADLWGNRHKPKFLLKARFPTIFKRLESWQDLGMGNVEYFTT CCHHHCCCEEEEEEEHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEE SAFGATRNQNKYFQPNSEEIYRDRSGVASVLGDSKKWRPFGLVSPIYWICTGKRNLHLEQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEECC D C >Mature Secondary Structure MFKSIFKPRNNQELKVENHSGVLRVIGDRAAGKTTYMAALARWPNADISSPVELVTPANK CCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCC DGESLIRQAQDLIEKGLQIEPTRLASDVLEIKDYSLRIVLKKTDNSKFSNTVLNLDISCK CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEEEEC DYSGEFFSDVLQETNSQLLRDYLNDCFPATGIMLMIDGTTHRKDLEYARGVDQLLVALAG CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHCHHHHHHHHHC GNIFSQKRRIALVLTKCELADLWGNRHKPKFLLKARFPTIFKRLESWQDLGMGNVEYFTT CCHHHCCCEEEEEEEHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEE SAFGATRNQNKYFQPNSEEIYRDRSGVASVLGDSKKWRPFGLVSPIYWICTGKRNLHLEQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEECC D C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA