| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is dnaG [H]
Identifier: 113474578
GI number: 113474578
Start: 1187125
End: 1189152
Strand: Reverse
Name: dnaG [H]
Synonym: Tery_0735
Alternate gene names: 113474578
Gene position: 1189152-1187125 (Counterclockwise)
Preceding gene: 113474584
Following gene: 113474576
Centisome position: 15.34
GC content: 32.05
Gene sequence:
>2028_bases ATGAATAATTTCCGTTTTCATCAAGATACTATTACAGAAGTCAAGCAAAGGGCTGACATTTATGATGTTATTTCAGAGCA TCTTTTATTAAAAAAGCGGGGAAAAGATTATGTAGGATTATGCCCTTTTCATGAAGAAAAAACTCCTAGCTTTACTGTTA GTACGACTAAACAACTGTACTACTGTTTTGGTTGTGGTGCAGCTGGTAACGTGTTGAAGTTTTTGATGGAAATTGGTAAG TCTTCTTTTAGTGATGTTGTATTAGATTTAGCGAGACGTTATCAAATACCAATTAAAACAGAATTACCGGAAAATAGACA AGAGTTTCAACGGCAAATTTCTCTGCGTGAAAAACTTTATGAAATCTTGGCAATAGCTAATAGTTTTTATCAACATGCCT TAAGACAACCCCAGGGAAAAATTGCTTTAGAGTATTTACAAATTTCACGTCAAACTTCAGAAGAAACCATTCAAAATTTT CAATTGGGTTATGCTCCTAATGGTTGGGAAACTATTTATGGTTATCTGGTAGAACAAAAAGGTTTGCCTGTAGAATTAGT CGAAAAAACTGGATTAATTTTGTCAAGAAAATCTGGTACTGGTTATTACGATAGATTTCGCGATCGCTTAATGATTCCTA TCAATGATATTCAAGGTAGAGTTATTGGTTTTGGTGGCAGAACTTTAAGTGATGAACAACCTAAATACTTGAATTCTCCT GAGACAGAATTATTTGATAAGGGTAAAACTTTATTTGCTTTGGATAAAGCAAAAACTGCTATTTCTAAACAAGATAAAGC TGTCGTTGTAGAGGGATATTTTGACGCGATCGCTCTTCATGCTTCAGGAATTAATAATGTTGTTGCTTCTCTTGGTACGG CCTTAAGTTCAATTCAAATTAGACAACTTTTACGTTACACAGAATCTAAACAAATCATCTTAAATTTTGATGCTGACCGA GCCGGTATTCAAGCTACTGAAAGAGCAATTGGAGAAATGGAAAAATTTGCTTATAGTGGGGAAGTTCAACTGAGAATTTT AAACATTCCTGACGGGAAAGATGCTGACGAATATTTGAAAACTTATTCTGGTAAAAAATATCAAGAATTATTGGTTAATT CTACTCTATGGATTGATTGGCAAATTCAAAATATAGTCAGAACTAAAAATCTTAGTCTGGCAGATGAATATACTAAAGCT AGTCAAGAAATAGTTAAAATATTAACGAAAATAACTAATGATAATCAATTTACTTATTATCTTCAATATTGTGCGCAAAT TTTGAGTCAGGAAGACACTCGGAGAGTTTCATTAATTTATGAAAATTTATTAACTCAAGTTTTTATTAATTGGAAAAAGA TCTTAGCTAAGGGTGAATTTATATCACCACCGTTACTAGTAGCGAAACAATTAAAATCTAATCAGCGAAATAATAGGAAC TTTACTAAGGGAAAAAAAAATCATTCACCAGAGGTTTTATCTCCACCTGTAAAAGGGAGTTTATTGGCAGAAGCTGAGTC TTTATTATTGCGTATTTACTTACATTGTCCTAACTATCGTCGAGAGGTGAAAGATGCAATGGAAGCAAGAGATTTACAGT TTAGCTTCGCTCACAATAGACTTTTGTGGCAGCAAATTGTTTCTGCAGAAAATATCTCGGAAAATGAAATTAATCAATCA GATGATTTAATTTCAAAGTTACAAGATACTTACTGGGAAAATCTAGATAAATTCCCTAATTTAAAGCATCTTTTTCATTT AGATGAAAAAACAAAAAAAAATATTCTTAGAGCCCCTTTAGAAATTCGTTCTTCAGTAGCAACTATAGAATTAATTATAT CAAAAAAACGTCAAAGTACTCTCTTGAATATGTGGCAAGAAACTGATTTATCCGTTGACCCAGAATTAGCTGAAAAATAT AAAGAAAAATTTTATAGTGAATCACAATGGATTCAGGAATTGGAGAGGTTAAGACTGACAACTATTCAAGATTTAATTGA AGTACCTTTAGGGGAATTAACTAACTAA
Upstream 100 bases:
>100_bases ATTTATGGCAGATAAGCACAAAAAAAATCAAGTACTGAGTAGTAAAACTTAATCTTGACTAGAAGATTCAAAGTTTAGAT TAAATTATTTAATAAATTCT
Downstream 100 bases:
>100_bases AATCATAGTACAAAAATAACTCTTCAAATTTTTCAGAGTAAACAAGTAAATATTTGAATATTAATGAATCTAAAAAACGA ATTATGTTATGAAATAGTAA
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MNNFRFHQDTITEVKQRADIYDVISEHLLLKKRGKDYVGLCPFHEEKTPSFTVSTTKQLYYCFGCGAAGNVLKFLMEIGK SSFSDVVLDLARRYQIPIKTELPENRQEFQRQISLREKLYEILAIANSFYQHALRQPQGKIALEYLQISRQTSEETIQNF QLGYAPNGWETIYGYLVEQKGLPVELVEKTGLILSRKSGTGYYDRFRDRLMIPINDIQGRVIGFGGRTLSDEQPKYLNSP ETELFDKGKTLFALDKAKTAISKQDKAVVVEGYFDAIALHASGINNVVASLGTALSSIQIRQLLRYTESKQIILNFDADR AGIQATERAIGEMEKFAYSGEVQLRILNIPDGKDADEYLKTYSGKKYQELLVNSTLWIDWQIQNIVRTKNLSLADEYTKA SQEIVKILTKITNDNQFTYYLQYCAQILSQEDTRRVSLIYENLLTQVFINWKKILAKGEFISPPLLVAKQLKSNQRNNRN FTKGKKNHSPEVLSPPVKGSLLAEAESLLLRIYLHCPNYRREVKDAMEARDLQFSFAHNRLLWQQIVSAENISENEINQS DDLISKLQDTYWENLDKFPNLKHLFHLDEKTKKNILRAPLEIRSSVATIELIISKKRQSTLLNMWQETDLSVDPELAEKY KEKFYSESQWIQELERLRLTTIQDLIEVPLGELTN
Sequences:
>Translated_675_residues MNNFRFHQDTITEVKQRADIYDVISEHLLLKKRGKDYVGLCPFHEEKTPSFTVSTTKQLYYCFGCGAAGNVLKFLMEIGK SSFSDVVLDLARRYQIPIKTELPENRQEFQRQISLREKLYEILAIANSFYQHALRQPQGKIALEYLQISRQTSEETIQNF QLGYAPNGWETIYGYLVEQKGLPVELVEKTGLILSRKSGTGYYDRFRDRLMIPINDIQGRVIGFGGRTLSDEQPKYLNSP ETELFDKGKTLFALDKAKTAISKQDKAVVVEGYFDAIALHASGINNVVASLGTALSSIQIRQLLRYTESKQIILNFDADR AGIQATERAIGEMEKFAYSGEVQLRILNIPDGKDADEYLKTYSGKKYQELLVNSTLWIDWQIQNIVRTKNLSLADEYTKA SQEIVKILTKITNDNQFTYYLQYCAQILSQEDTRRVSLIYENLLTQVFINWKKILAKGEFISPPLLVAKQLKSNQRNNRN FTKGKKNHSPEVLSPPVKGSLLAEAESLLLRIYLHCPNYRREVKDAMEARDLQFSFAHNRLLWQQIVSAENISENEINQS DDLISKLQDTYWENLDKFPNLKHLFHLDEKTKKNILRAPLEIRSSVATIELIISKKRQSTLLNMWQETDLSVDPELAEKY KEKFYSESQWIQELERLRLTTIQDLIEVPLGELTN >Mature_675_residues MNNFRFHQDTITEVKQRADIYDVISEHLLLKKRGKDYVGLCPFHEEKTPSFTVSTTKQLYYCFGCGAAGNVLKFLMEIGK SSFSDVVLDLARRYQIPIKTELPENRQEFQRQISLREKLYEILAIANSFYQHALRQPQGKIALEYLQISRQTSEETIQNF QLGYAPNGWETIYGYLVEQKGLPVELVEKTGLILSRKSGTGYYDRFRDRLMIPINDIQGRVIGFGGRTLSDEQPKYLNSP ETELFDKGKTLFALDKAKTAISKQDKAVVVEGYFDAIALHASGINNVVASLGTALSSIQIRQLLRYTESKQIILNFDADR AGIQATERAIGEMEKFAYSGEVQLRILNIPDGKDADEYLKTYSGKKYQELLVNSTLWIDWQIQNIVRTKNLSLADEYTKA SQEIVKILTKITNDNQFTYYLQYCAQILSQEDTRRVSLIYENLLTQVFINWKKILAKGEFISPPLLVAKQLKSNQRNNRN FTKGKKNHSPEVLSPPVKGSLLAEAESLLLRIYLHCPNYRREVKDAMEARDLQFSFAHNRLLWQQIVSAENISENEINQS DDLISKLQDTYWENLDKFPNLKHLFHLDEKTKKNILRAPLEIRSSVATIELIISKKRQSTLLNMWQETDLSVDPELAEKY KEKFYSESQWIQELERLRLTTIQDLIEVPLGELTN
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=415, Percent_Identity=36.3855421686747, Blast_Score=276, Evalue=2e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013264 - InterPro: IPR006295 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.-
Molecular weight: Translated: 77900; Mature: 77900
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNFRFHQDTITEVKQRADIYDVISEHLLLKKRGKDYVGLCPFHEEKTPSFTVSTTKQLY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHEEE YCFGCGAAGNVLKFLMEIGKSSFSDVVLDLARRYQIPIKTELPENRQEFQRQISLREKLY EEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH EILAIANSFYQHALRQPQGKIALEYLQISRQTSEETIQNFQLGYAPNGWETIYGYLVEQK HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC GLPVELVEKTGLILSRKSGTGYYDRFRDRLMIPINDIQGRVIGFGGRTLSDEQPKYLNSP CCCHHHHHHCCCEEEECCCCCHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCC ETELFDKGKTLFALDKAKTAISKQDKAVVVEGYFDAIALHASGINNVVASLGTALSSIQI CHHHHHCCCEEEEEHHHHHHHCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHH RQLLRYTESKQIILNFDADRAGIQATERAIGEMEKFAYSGEVQLRILNIPDGKDADEYLK HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH TYSGKKYQELLVNSTLWIDWQIQNIVRTKNLSLADEYTKASQEIVKILTKITNDNQFTYY HHCCCHHHHHHHCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH LQYCAQILSQEDTRRVSLIYENLLTQVFINWKKILAKGEFISPPLLVAKQLKSNQRNNRN HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCC FTKGKKNHSPEVLSPPVKGSLLAEAESLLLRIYLHCPNYRREVKDAMEARDLQFSFAHNR CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHH LLWQQIVSAENISENEINQSDDLISKLQDTYWENLDKFPNLKHLFHLDEKTKKNILRAPL HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCH EIRSSVATIELIISKKRQSTLLNMWQETDLSVDPELAEKYKEKFYSESQWIQELERLRLT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH TIQDLIEVPLGELTN HHHHHHHCCHHHCCC >Mature Secondary Structure MNNFRFHQDTITEVKQRADIYDVISEHLLLKKRGKDYVGLCPFHEEKTPSFTVSTTKQLY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECHHEEE YCFGCGAAGNVLKFLMEIGKSSFSDVVLDLARRYQIPIKTELPENRQEFQRQISLREKLY EEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH EILAIANSFYQHALRQPQGKIALEYLQISRQTSEETIQNFQLGYAPNGWETIYGYLVEQK HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC GLPVELVEKTGLILSRKSGTGYYDRFRDRLMIPINDIQGRVIGFGGRTLSDEQPKYLNSP CCCHHHHHHCCCEEEECCCCCHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCC ETELFDKGKTLFALDKAKTAISKQDKAVVVEGYFDAIALHASGINNVVASLGTALSSIQI CHHHHHCCCEEEEEHHHHHHHCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHH RQLLRYTESKQIILNFDADRAGIQATERAIGEMEKFAYSGEVQLRILNIPDGKDADEYLK HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH TYSGKKYQELLVNSTLWIDWQIQNIVRTKNLSLADEYTKASQEIVKILTKITNDNQFTYY HHCCCHHHHHHHCCEEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH LQYCAQILSQEDTRRVSLIYENLLTQVFINWKKILAKGEFISPPLLVAKQLKSNQRNNRN HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCC FTKGKKNHSPEVLSPPVKGSLLAEAESLLLRIYLHCPNYRREVKDAMEARDLQFSFAHNR CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHH LLWQQIVSAENISENEINQSDDLISKLQDTYWENLDKFPNLKHLFHLDEKTKKNILRAPL HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHCCH EIRSSVATIELIISKKRQSTLLNMWQETDLSVDPELAEKYKEKFYSESQWIQELERLRLT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH TIQDLIEVPLGELTN HHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]