Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474548
Identifier: 113474548
GI number: 113474548
Start: 1138145
End: 1139647
Strand: Reverse
Name: 113474548
Synonym: Tery_0702
Alternate gene names: NA
Gene position: 1139647-1138145 (Counterclockwise)
Preceding gene: 113474549
Following gene: 113474547
Centisome position: 14.7
GC content: 34.0
Gene sequence:
>1503_bases ATGACTAACTTTGATAAAAAAAAGCTATTAGAAATTATGGCTAATGTTACACCAGGAAAAGGTATAGCTGAACATGAAAG TGATAATGAAAATTTATTTCTAAAAAACTTTTTACCTGTAGATCGCTACCGTAAGACATTGGACACTGATACATTTTTAA TATTAGGTGGCAGAGGTGTTGGTAAAACAGAATTTTTTCGTTTACTAGGAAGTCCTAATGGTCGCAAAGCCTTAGTAAAA AACTTAACAATTAAACGCTTACCCCCTTTAGAAAAAACAATTTGGATTGCTGGATATGGTCGTACTAAGACTAGGGAAAA AAAATTTCCTACACCAGATGTAACAGAAAACTACATGAAAGACAAGGATAGAAGTGATTGGCGTATTTTTTGGATCGGAT TGGTATTAGGAGTAATATTTCAACAAGAAAAAGAATTATCAAATCACAATTGGGCTCAGGAAATACCAGAGGACATTCGT GGTTGTTTAACTAACAAATTATCATTACTTTCCGGCTGGTTTCCAGATGCTCGCCAGAACTTTGAAAGTATCAACTATGC TTTAGATAAATTAGATGAAGAATTATTGGCAGACGATCGCTGGTTATTTATCACTTATGATGAACTAGATCGAATTGTTC CTTCTTATTTAAAACTGCGGGCTCCCATCGCCGAACTATTAGCATTTTGGCTAGATAGATGGCGTCGTTGGGAACGAATT AGACCCAAAATATTTCTACGCACAGACTTATTTCAACACGATTTTTTAGGATTTCCAGATGCTTCTAAACTCAGGGGACA TCAAATTACTTTAGAGTGGAAAACTCCATTGTTATATCAGTTATTGGTAAAGCGTTTAGCTAACTCTGGAGAAGAAATGA ATGATTATTTAAAAATAGTTCCTGATTTAATTCCTTCAACTTTAAAAAGAGATAACATCCTAGGTATATTACCTACATCA GATGAATCTCGTTTTGAATTATTAATGGAAAAAATAGTTGGGGTATTTATGGGAGAAAATCCTCGCAAAGGCTACACTTA TAACTGGATTTCTAATCACCTTCAAGATGCAAAACGTAGCATTTCTCCTCGTTCTTTTTTAAGGTTATTCTCCTTGGCTG CAGAGCGTAGATTAGAAAAATTTGACGAAAAAGAATTGCCCGAAAATCGCTTATTAGAACCTTCTGATTTACAAGGAGCT TTAATGGATACCTCTCAAGATCGAATCAAAGAACTTACAGAGGAAGAATATCCCTGGTTAGAAGCTTTAAGAAAAGAACT TAAAGATTTAACACTTCTAACTGAAGAAGAAAAATTTCTCAACTTACTAGAAAACACAAAATGGAACCAAGAACCACCTT CATTAAAGCCCCAAGAAATTTTACAATACTTAGAACAATTAGGTATTGTTGAAATTCGCTTAGATCGGAGAATTAATATC CCCGATATTTATCGATATGGTTTTGAAGTTAAACGCAAGGGTGGAATTAAACGTTCAAGATAA
Upstream 100 bases:
>100_bases ATATTATTGATATTTTAACAGGTAAACCTTATCAACGACTGGCAGAAAGACTGTGCCGTCTTTTTAACCGTAAATTGAAC CTGAAAAATTAGGTAGGAAA
Downstream 100 bases:
>100_bases AACAATTAAAATCAAGGAATTATTTGTCATTAATATTGATTTTGAATTCCTTGAGTTCCACTTATAAATTTATTATCATA TCCAATATTTGCTTATCCTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 500; Mature: 499
Protein sequence:
>500_residues MTNFDKKKLLEIMANVTPGKGIAEHESDNENLFLKNFLPVDRYRKTLDTDTFLILGGRGVGKTEFFRLLGSPNGRKALVK NLTIKRLPPLEKTIWIAGYGRTKTREKKFPTPDVTENYMKDKDRSDWRIFWIGLVLGVIFQQEKELSNHNWAQEIPEDIR GCLTNKLSLLSGWFPDARQNFESINYALDKLDEELLADDRWLFITYDELDRIVPSYLKLRAPIAELLAFWLDRWRRWERI RPKIFLRTDLFQHDFLGFPDASKLRGHQITLEWKTPLLYQLLVKRLANSGEEMNDYLKIVPDLIPSTLKRDNILGILPTS DESRFELLMEKIVGVFMGENPRKGYTYNWISNHLQDAKRSISPRSFLRLFSLAAERRLEKFDEKELPENRLLEPSDLQGA LMDTSQDRIKELTEEEYPWLEALRKELKDLTLLTEEEKFLNLLENTKWNQEPPSLKPQEILQYLEQLGIVEIRLDRRINI PDIYRYGFEVKRKGGIKRSR
Sequences:
>Translated_500_residues MTNFDKKKLLEIMANVTPGKGIAEHESDNENLFLKNFLPVDRYRKTLDTDTFLILGGRGVGKTEFFRLLGSPNGRKALVK NLTIKRLPPLEKTIWIAGYGRTKTREKKFPTPDVTENYMKDKDRSDWRIFWIGLVLGVIFQQEKELSNHNWAQEIPEDIR GCLTNKLSLLSGWFPDARQNFESINYALDKLDEELLADDRWLFITYDELDRIVPSYLKLRAPIAELLAFWLDRWRRWERI RPKIFLRTDLFQHDFLGFPDASKLRGHQITLEWKTPLLYQLLVKRLANSGEEMNDYLKIVPDLIPSTLKRDNILGILPTS DESRFELLMEKIVGVFMGENPRKGYTYNWISNHLQDAKRSISPRSFLRLFSLAAERRLEKFDEKELPENRLLEPSDLQGA LMDTSQDRIKELTEEEYPWLEALRKELKDLTLLTEEEKFLNLLENTKWNQEPPSLKPQEILQYLEQLGIVEIRLDRRINI PDIYRYGFEVKRKGGIKRSR >Mature_499_residues TNFDKKKLLEIMANVTPGKGIAEHESDNENLFLKNFLPVDRYRKTLDTDTFLILGGRGVGKTEFFRLLGSPNGRKALVKN LTIKRLPPLEKTIWIAGYGRTKTREKKFPTPDVTENYMKDKDRSDWRIFWIGLVLGVIFQQEKELSNHNWAQEIPEDIRG CLTNKLSLLSGWFPDARQNFESINYALDKLDEELLADDRWLFITYDELDRIVPSYLKLRAPIAELLAFWLDRWRRWERIR PKIFLRTDLFQHDFLGFPDASKLRGHQITLEWKTPLLYQLLVKRLANSGEEMNDYLKIVPDLIPSTLKRDNILGILPTSD ESRFELLMEKIVGVFMGENPRKGYTYNWISNHLQDAKRSISPRSFLRLFSLAAERRLEKFDEKELPENRLLEPSDLQGAL MDTSQDRIKELTEEEYPWLEALRKELKDLTLLTEEEKFLNLLENTKWNQEPPSLKPQEILQYLEQLGIVEIRLDRRINIP DIYRYGFEVKRKGGIKRSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58991; Mature: 58860
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNFDKKKLLEIMANVTPGKGIAEHESDNENLFLKNFLPVDRYRKTLDTDTFLILGGRGV CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHCCCHHHHHHHCCCCEEEEECCCCC GKTEFFRLLGSPNGRKALVKNLTIKRLPPLEKTIWIAGYGRTKTREKKFPTPDVTENYMK CHHHHHHHHCCCCCHHHHHHCCCHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHC DKDRSDWRIFWIGLVLGVIFQQEKELSNHNWAQEIPEDIRGCLTNKLSLLSGWFPDARQN CCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH FESINYALDKLDEELLADDRWLFITYDELDRIVPSYLKLRAPIAELLAFWLDRWRRWERI HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC RPKIFLRTDLFQHDFLGFPDASKLRGHQITLEWKTPLLYQLLVKRLANSGEEMNDYLKIV CCEEEEEHHHHHHHCCCCCCHHHCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHH PDLIPSTLKRDNILGILPTSDESRFELLMEKIVGVFMGENPRKGYTYNWISNHLQDAKRS HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC ISPRSFLRLFSLAAERRLEKFDEKELPENRLLEPSDLQGALMDTSQDRIKELTEEEYPWL CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHHCCHHH EALRKELKDLTLLTEEEKFLNLLENTKWNQEPPSLKPQEILQYLEQLGIVEIRLDRRINI HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCC PDIYRYGFEVKRKGGIKRSR CHHHHHCCHHHHCCCCCCCC >Mature Secondary Structure TNFDKKKLLEIMANVTPGKGIAEHESDNENLFLKNFLPVDRYRKTLDTDTFLILGGRGV CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHCCCHHHHHHHCCCCEEEEECCCCC GKTEFFRLLGSPNGRKALVKNLTIKRLPPLEKTIWIAGYGRTKTREKKFPTPDVTENYMK CHHHHHHHHCCCCCHHHHHHCCCHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHC DKDRSDWRIFWIGLVLGVIFQQEKELSNHNWAQEIPEDIRGCLTNKLSLLSGWFPDARQN CCCCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH FESINYALDKLDEELLADDRWLFITYDELDRIVPSYLKLRAPIAELLAFWLDRWRRWERI HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC RPKIFLRTDLFQHDFLGFPDASKLRGHQITLEWKTPLLYQLLVKRLANSGEEMNDYLKIV CCEEEEEHHHHHHHCCCCCCHHHCCCCEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHH PDLIPSTLKRDNILGILPTSDESRFELLMEKIVGVFMGENPRKGYTYNWISNHLQDAKRS HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC ISPRSFLRLFSLAAERRLEKFDEKELPENRLLEPSDLQGALMDTSQDRIKELTEEEYPWL CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHCCCHHHHHHHHHHCCHHH EALRKELKDLTLLTEEEKFLNLLENTKWNQEPPSLKPQEILQYLEQLGIVEIRLDRRINI HHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCC PDIYRYGFEVKRKGGIKRSR CHHHHHCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA