Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
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Accession | NC_008312 |
Length | 7,750,108 |
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The map label for this gene is 113474547
Identifier: 113474547
GI number: 113474547
Start: 1137030
End: 1138022
Strand: Reverse
Name: 113474547
Synonym: Tery_0701
Alternate gene names: NA
Gene position: 1138022-1137030 (Counterclockwise)
Preceding gene: 113474548
Following gene: 113474542
Centisome position: 14.68
GC content: 30.61
Gene sequence:
>993_bases ATGTCAGCAACATTTGAACAAGTATTTGTACATCCAAGTCAATTTCCGGACCAAGTTTATCAAGATTATTTAGTTAGTTT CTCGGGGAAAAAAATTAATCATAAGTTTCATTATGATAGTGTTAAGCAAAGTCAAAAATGGTTAAAAATTCATCAAGAAT ATTCCCCTTCTCAAAATGATAGAAATTGTGTTGATACTTATAAAAAATGTTTCCAAAAAACAGCAGAAACTCTAGATAAA TTTTCCAGTTTACAGTTAATTGGATTAGGTTCTGGTGGTGGAACTAAAGATAGTTTGTTATTGTCCTACTTATCTAATAA ACGACGAGAATTAACTTATTATCCTCTAGATGTTAGTTTATCTCTAGCAATAATTTCTGCTCAAAAAGCTAGGAGTTCTT TTCCTGAATTATCTGTACAACCAATTGTTTGTGATTTACTTCATAGTGATAATTTAATGCTTCAGATTCAGAAAAGAAGT GAGCAGGAAAGGAGAATTATTACATTTTTTGGCATGATTCCTAATTTTCATCCCCAGGAAATTTTCCCAATTTTAAACAA TTTTTTGGTTGAGGGAGATTTATTGCTATTAAGTGCAAATTTAGCACCTGGTTCTGACTATGTTCAAGGTATTGAAAAAA TAATGGCGCAATATAATAATAACTTGACTAAAGATTGGCTAACTACTGTATTGGAAGATGTGGGAGTTAACCGGGAAAAT GGGAGCATTAAATTTAGGATTAAAGATGATGAGGAAAAACCTGATTTAAAAAGAGTTAATGCTGATTTTGAATTAAATAA TGATGTGACTTTTAAATTGGATAATCAATTGATAGAATGGAAAAGCGGAGATAAAATTGGGTTATTTTTTTCCTACCGTT ATACTACTGCAAAACTCCAAGAAATCCTCAGTAGTTATGGGATAAATATGTTGAATTATTGGGAATCTGCTAATCAAGAA GAAGGAGTTTATCTCTGCCAAAAAAGTATATAG
Upstream 100 bases:
>100_bases TTTGTCATTAATATTGATTTTGAATTCCTTGAGTTCCACTTATAAATTTATTATCATATCCAATATTTGCTTATCCTAAA TCAAATAATCTTTAATTATT
Downstream 100 bases:
>100_bases GGTTTGCTGAAAAAACATTTTTAAGGAGTATTGAAAAAAGGTATTCACCCCTAACTATAACCAACCTACCCCTAACCCCT CCCAGGAGGAAAAATAGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MSATFEQVFVHPSQFPDQVYQDYLVSFSGKKINHKFHYDSVKQSQKWLKIHQEYSPSQNDRNCVDTYKKCFQKTAETLDK FSSLQLIGLGSGGGTKDSLLLSYLSNKRRELTYYPLDVSLSLAIISAQKARSSFPELSVQPIVCDLLHSDNLMLQIQKRS EQERRIITFFGMIPNFHPQEIFPILNNFLVEGDLLLLSANLAPGSDYVQGIEKIMAQYNNNLTKDWLTTVLEDVGVNREN GSIKFRIKDDEEKPDLKRVNADFELNNDVTFKLDNQLIEWKSGDKIGLFFSYRYTTAKLQEILSSYGINMLNYWESANQE EGVYLCQKSI
Sequences:
>Translated_330_residues MSATFEQVFVHPSQFPDQVYQDYLVSFSGKKINHKFHYDSVKQSQKWLKIHQEYSPSQNDRNCVDTYKKCFQKTAETLDK FSSLQLIGLGSGGGTKDSLLLSYLSNKRRELTYYPLDVSLSLAIISAQKARSSFPELSVQPIVCDLLHSDNLMLQIQKRS EQERRIITFFGMIPNFHPQEIFPILNNFLVEGDLLLLSANLAPGSDYVQGIEKIMAQYNNNLTKDWLTTVLEDVGVNREN GSIKFRIKDDEEKPDLKRVNADFELNNDVTFKLDNQLIEWKSGDKIGLFFSYRYTTAKLQEILSSYGINMLNYWESANQE EGVYLCQKSI >Mature_329_residues SATFEQVFVHPSQFPDQVYQDYLVSFSGKKINHKFHYDSVKQSQKWLKIHQEYSPSQNDRNCVDTYKKCFQKTAETLDKF SSLQLIGLGSGGGTKDSLLLSYLSNKRRELTYYPLDVSLSLAIISAQKARSSFPELSVQPIVCDLLHSDNLMLQIQKRSE QERRIITFFGMIPNFHPQEIFPILNNFLVEGDLLLLSANLAPGSDYVQGIEKIMAQYNNNLTKDWLTTVLEDVGVNRENG SIKFRIKDDEEKPDLKRVNADFELNNDVTFKLDNQLIEWKSGDKIGLFFSYRYTTAKLQEILSSYGINMLNYWESANQEE GVYLCQKSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38027; Mature: 37895
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATFEQVFVHPSQFPDQVYQDYLVSFSGKKINHKFHYDSVKQSQKWLKIHQEYSPSQND CCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCCC RNCVDTYKKCFQKTAETLDKFSSLQLIGLGSGGGTKDSLLLSYLSNKRRELTYYPLDVSL CHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCEE SLAIISAQKARSSFPELSVQPIVCDLLHSDNLMLQIQKRSEQERRIITFFGMIPNFHPQE EEEEEEHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCHHEEEEEEECCCCCCHHH IFPILNNFLVEGDLLLLSANLAPGSDYVQGIEKIMAQYNNNLTKDWLTTVLEDVGVNREN HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC GSIKFRIKDDEEKPDLKRVNADFELNNDVTFKLDNQLIEWKSGDKIGLFFSYRYTTAKLQ CEEEEEECCCCCCCCHHHCCCCEEECCCEEEEECCEEEEECCCCEEEEEEEEECHHHHHH EILSSYGINMLNYWESANQEEGVYLCQKSI HHHHHHCCHHHHHHHCCCCCCCEEEEECCC >Mature Secondary Structure SATFEQVFVHPSQFPDQVYQDYLVSFSGKKINHKFHYDSVKQSQKWLKIHQEYSPSQND CCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCCC RNCVDTYKKCFQKTAETLDKFSSLQLIGLGSGGGTKDSLLLSYLSNKRRELTYYPLDVSL CHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCEE SLAIISAQKARSSFPELSVQPIVCDLLHSDNLMLQIQKRSEQERRIITFFGMIPNFHPQE EEEEEEHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCHHEEEEEEECCCCCCHHH IFPILNNFLVEGDLLLLSANLAPGSDYVQGIEKIMAQYNNNLTKDWLTTVLEDVGVNREN HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC GSIKFRIKDDEEKPDLKRVNADFELNNDVTFKLDNQLIEWKSGDKIGLFFSYRYTTAKLQ CEEEEEECCCCCCCCHHHCCCCEEECCCEEEEECCEEEEECCCCEEEEEEEEECHHHHHH EILSSYGINMLNYWESANQEEGVYLCQKSI HHHHHHCCHHHHHHHCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA