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The map label for this gene is dsbD [H]

Identifier: 113474482

GI number: 113474482

Start: 1029386

End: 1030117

Strand: Reverse

Name: dsbD [H]

Synonym: Tery_0628

Alternate gene names: 113474482

Gene position: 1030117-1029386 (Counterclockwise)

Preceding gene: 113474485

Following gene: 113474481

Centisome position: 13.29

GC content: 34.56

Gene sequence:

>732_bases
ATGGAAACTATCCTAACTTTCTTTTACGAAACCGCCCAATATGCAAATAGTTTAGTAAAAACTCAACTAACACACCTAAG
TTGGGTAAGTTTAGTAACTATCTTTGTAGCTGGTTTACTGACCAGTCTTACTCCTTGCATGCTTTCCATGCTACCAATAA
CTATTGGTTATATTGGCGGATACGAAGCTAAAAGTCGTATTCAAGCTACTGTTCAATCTGCTTGGTTTTCTCTAGGATTA
GCTACAACTTTAGCTGGGTTAGGTATTATAGCATCATTGCTGGGAAAAGTCTATGGTCAAGTAGGTGTAGGATTACCAAT
TGTTGTTAGTATAATAGCTATTTTTATGGGTCTTAACTTACTAGAAGCATTACCATTACCAATGCCATCTTTTGACAGTA
TGGGATGGATATCTCAAGATTTACCTAAAGGAGTACGTTCATATTTATTAGGTTTAACATTTGGTTTAATAGCATCTCCT
TGTAGCACTCCTGTATTAGCGACATTATTAGCTTGGGTTTCGACTACTGGAGATTTAATTTTAGGTGGATTTTTCTTGCT
ATTTTATGCTATGGGTTATGTCACACCTTTGATATTAGCAGGAGCTTTTACAGCTAATATTAAAAAATTTTTGGAAATTA
GAAAATGGTCTAGTTGGATTACACCTGCTAGTGGAATTTTATTAGTTGGTTTTGGTGTATTTTCACTTTTATCTAGGATT
ATACCAGTGTAA

Upstream 100 bases:

>100_bases
TTGATTGTTGAAATTTGCTATAAAATACCATTATTTAATGAAGCTATCAAAAATTCTATAAGTATAAAAGCCATACAACT
CTTATTAAGGTAACCAAACA

Downstream 100 bases:

>100_bases
GTTTGCAGCTATTAGCATTTAGTTATCAGTTTTTTTATACCTAATTAATGGATTTAATATAAGTTATATTAGGAATATTA
ATACTTCTCTCATAAAGTAA

Product: cytochrome c biogenesis protein, transmembrane region

Products: NA

Alternate protein names: Protein-disulfide reductase; Disulfide reductase [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
METILTFFYETAQYANSLVKTQLTHLSWVSLVTIFVAGLLTSLTPCMLSMLPITIGYIGGYEAKSRIQATVQSAWFSLGL
ATTLAGLGIIASLLGKVYGQVGVGLPIVVSIIAIFMGLNLLEALPLPMPSFDSMGWISQDLPKGVRSYLLGLTFGLIASP
CSTPVLATLLAWVSTTGDLILGGFFLLFYAMGYVTPLILAGAFTANIKKFLEIRKWSSWITPASGILLVGFGVFSLLSRI
IPV

Sequences:

>Translated_243_residues
METILTFFYETAQYANSLVKTQLTHLSWVSLVTIFVAGLLTSLTPCMLSMLPITIGYIGGYEAKSRIQATVQSAWFSLGL
ATTLAGLGIIASLLGKVYGQVGVGLPIVVSIIAIFMGLNLLEALPLPMPSFDSMGWISQDLPKGVRSYLLGLTFGLIASP
CSTPVLATLLAWVSTTGDLILGGFFLLFYAMGYVTPLILAGAFTANIKKFLEIRKWSSWITPASGILLVGFGVFSLLSRI
IPV
>Mature_243_residues
METILTFFYETAQYANSLVKTQLTHLSWVSLVTIFVAGLLTSLTPCMLSMLPITIGYIGGYEAKSRIQATVQSAWFSLGL
ATTLAGLGIIASLLGKVYGQVGVGLPIVVSIIAIFMGLNLLEALPLPMPSFDSMGWISQDLPKGVRSYLLGLTFGLIASP
CSTPVLATLLAWVSTTGDLILGGFFLLFYAMGYVTPLILAGAFTANIKKFLEIRKWSSWITPASGILLVGFGVFSLLSRI
IPV

Specific function: Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI1790578, Length=214, Percent_Identity=30.3738317757009, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834
- InterPro:   IPR022910
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02683 DsbD; PF00085 Thioredoxin [H]

EC number: =1.8.1.8 [H]

Molecular weight: Translated: 26024; Mature: 26024

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure
METILTFFYETAQYANSLVKTQLTHLSWVSLVTIFVAGLLTSLTPCMLSMLPITIGYIGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YEAKSRIQATVQSAWFSLGLATTLAGLGIIASLLGKVYGQVGVGLPIVVSIIAIFMGLNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LEALPLPMPSFDSMGWISQDLPKGVRSYLLGLTFGLIASPCSTPVLATLLAWVSTTGDLI
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH
LGGFFLLFYAMGYVTPLILAGAFTANIKKFLEIRKWSSWITPASGILLVGFGVFSLLSRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
IPV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA