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The map label for this gene is ccsB

Identifier: 113474481

GI number: 113474481

Start: 1027704

End: 1029122

Strand: Reverse

Name: ccsB

Synonym: Tery_0627

Alternate gene names: 113474481

Gene position: 1029122-1027704 (Counterclockwise)

Preceding gene: 113474482

Following gene: 113474477

Centisome position: 13.28

GC content: 33.19

Gene sequence:

>1419_bases
ATGGATGTTGAAGATTCAGATAAAAATTCTCTGATAAATCCTTTAAGAATATTTAAACGAGAAATATTGCCATTATTAGC
TGATTTACGCTTGGCGATCGCTCTACTTTTAATAATAGCTATCTGTAGTATTTCAGGCACAGTTATAGAACAAGGTGAGT
CAATAGCTTTTTATCAAGAAAACTATCCAGAAAAACCAGCATTATTTGGTTTTTTAACCTGGAAAGTAATTTTATTATTA
GAATTAGATCATGTTTACCGGACTTGGTGGTTTTTATCAATATTAATATTATTCGGAGCTAGTTTAACTGCCTGCACATT
TACTAGACAATTACCAGCCCTAAAATCTGCGAACCGCTGGAAATTTTATAATAAAAAACAACAATTTAAAAACTTAGCAT
TAAGTGCAGAAATAGAAACAGCTTCTCTAGATTCTTTAGAAGAAATATTACAGAAAAGGGGCTATAAAACTTCTAAAGAA
GGAGATAAACTTTATGGAAGAAAAGGAATTATTGGCAAAGTTGGTCCCATAATAGTTCACGCTAGTATGCTAATAATTTT
AGCAGGTTCAATAATCGGCTCAATGACTGGATTTCTTGGTCAAGAAATAGTGCCGAGTGGGGAAACATTTCAAGTAAAAA
ATATTATTGATGCGGGAATTTTTGCTAAGTCACAAATTCCTAAAAATTGGTCAGTTCGAGTCAATCGTTTCTGGATTGAT
TATACTCCTTCTGGAGGAATTGACCAGTTTTATTCTGACTTATCAATATTAGATAAAAGTGGAGAAGAAGTAGATAGGAA
AACCATATTTGTTAATCAACCTATGCGTTATCATGGGGTGACAATGTATCAAGCAGATTGGGCGATCGCTGCAGTTAAAG
TTAGGGTTAATAAAAGTCCTGTTTTTCGGTTACCAATGGCACAATTAAATACAGAAGGAGGGGGTAAAATTTGGGGTACT
TGGGTTCCTATAAAACCAGATTTAAGTGAAGGTGTATCTTTACTTGCCAAAGATTTACAAGGAAATGTATTAGTTTATGA
TACTTCTGGTAAGTTAGTTGCTAGTGTGCGGGAAGGAATGTTTATAGAGGTGAGTGGTGTCACTCTATTTATTGACAAAA
TTATAGGTAGTACAGGCTTACAAATTAAAGCTGACCCTGGTATTCCAATTGTTTATTTAGGTTTTGGTTTATTAATGTTG
AGTGTATTAATGAGTTATGTTTCTCACTCTCAAATTTGGGCTTTTCAAGAGAGTGAGCGACTTTATATAGGGGGTAAAAC
TAATCGTGCTAATGTGACATTTGAACGGGAAATATTAGATATTTTAGATAGATTAGGAAGTGATGAAAATATATCTCTTG
AAAAGCAAAAGCAACTTTTCTCAGATTTTAGTGAGGGTATTAAAACAAGTGAGAATTGA

Upstream 100 bases:

>100_bases
AAAATTTTAGTTAAACCACCGGGCGATTTTTTTTAATGTTGAGTTATACCTAACTTATTGACTACAATAAAAATTATTGA
AACTAATAGTAATTAAATCA

Downstream 100 bases:

>100_bases
ACAAGAATTAAATAAGGTAGTTGGGGGATAAATTCTGGATATATTTTTACCTTGGTATAGATAATCAAGTTTAGTCTTAA
CTTTATGAACAATTTGCAGA

Product: ResB-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MDVEDSDKNSLINPLRIFKREILPLLADLRLAIALLLIIAICSISGTVIEQGESIAFYQENYPEKPALFGFLTWKVILLL
ELDHVYRTWWFLSILILFGASLTACTFTRQLPALKSANRWKFYNKKQQFKNLALSAEIETASLDSLEEILQKRGYKTSKE
GDKLYGRKGIIGKVGPIIVHASMLIILAGSIIGSMTGFLGQEIVPSGETFQVKNIIDAGIFAKSQIPKNWSVRVNRFWID
YTPSGGIDQFYSDLSILDKSGEEVDRKTIFVNQPMRYHGVTMYQADWAIAAVKVRVNKSPVFRLPMAQLNTEGGGKIWGT
WVPIKPDLSEGVSLLAKDLQGNVLVYDTSGKLVASVREGMFIEVSGVTLFIDKIIGSTGLQIKADPGIPIVYLGFGLLML
SVLMSYVSHSQIWAFQESERLYIGGKTNRANVTFEREILDILDRLGSDENISLEKQKQLFSDFSEGIKTSEN

Sequences:

>Translated_472_residues
MDVEDSDKNSLINPLRIFKREILPLLADLRLAIALLLIIAICSISGTVIEQGESIAFYQENYPEKPALFGFLTWKVILLL
ELDHVYRTWWFLSILILFGASLTACTFTRQLPALKSANRWKFYNKKQQFKNLALSAEIETASLDSLEEILQKRGYKTSKE
GDKLYGRKGIIGKVGPIIVHASMLIILAGSIIGSMTGFLGQEIVPSGETFQVKNIIDAGIFAKSQIPKNWSVRVNRFWID
YTPSGGIDQFYSDLSILDKSGEEVDRKTIFVNQPMRYHGVTMYQADWAIAAVKVRVNKSPVFRLPMAQLNTEGGGKIWGT
WVPIKPDLSEGVSLLAKDLQGNVLVYDTSGKLVASVREGMFIEVSGVTLFIDKIIGSTGLQIKADPGIPIVYLGFGLLML
SVLMSYVSHSQIWAFQESERLYIGGKTNRANVTFEREILDILDRLGSDENISLEKQKQLFSDFSEGIKTSEN
>Mature_472_residues
MDVEDSDKNSLINPLRIFKREILPLLADLRLAIALLLIIAICSISGTVIEQGESIAFYQENYPEKPALFGFLTWKVILLL
ELDHVYRTWWFLSILILFGASLTACTFTRQLPALKSANRWKFYNKKQQFKNLALSAEIETASLDSLEEILQKRGYKTSKE
GDKLYGRKGIIGKVGPIIVHASMLIILAGSIIGSMTGFLGQEIVPSGETFQVKNIIDAGIFAKSQIPKNWSVRVNRFWID
YTPSGGIDQFYSDLSILDKSGEEVDRKTIFVNQPMRYHGVTMYQADWAIAAVKVRVNKSPVFRLPMAQLNTEGGGKIWGT
WVPIKPDLSEGVSLLAKDLQGNVLVYDTSGKLVASVREGMFIEVSGVTLFIDKIIGSTGLQIKADPGIPIVYLGFGLLML
SVLMSYVSHSQIWAFQESERLYIGGKTNRANVTFEREILDILDRLGSDENISLEKQKQLFSDFSEGIKTSEN

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCS1_TRIEI (Q118K5)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720542.1
- STRING:   Q118K5
- GeneID:   4242765
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_0627
- NMPDR:   fig|203124.1.peg.573
- eggNOG:   COG1333
- HOGENOM:   HBG635079
- OMA:   MELIAID
- ProtClustDB:   CLSK893068
- BioCyc:   TERY203124:TERY_0627-MONOMER
- HAMAP:   MF_01392
- InterPro:   IPR007816

Pfam domain/function: PF05140 ResB

EC number: NA

Molecular weight: Translated: 52769; Mature: 52769

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x158bfe98)-; HASH(0x14c492a4)-; HASH(0x140fb4e4)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVEDSDKNSLINPLRIFKREILPLLADLRLAIALLLIIAICSISGTVIEQGESIAFYQE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECC
NYPEKPALFGFLTWKVILLLELDHVYRTWWFLSILILFGASLTACTFTRQLPALKSANRW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHCCCCCC
KFYNKKQQFKNLALSAEIETASLDSLEEILQKRGYKTSKEGDKLYGRKGIIGKVGPIIVH
CCCCHHHHHHHCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCHHHHHHH
ASMLIILAGSIIGSMTGFLGQEIVPSGETFQVKNIIDAGIFAKSQIPKNWSVRVNRFWID
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCEECCCCCCCCCEEEEEEEEE
YTPSGGIDQFYSDLSILDKSGEEVDRKTIFVNQPMRYHGVTMYQADWAIAAVKVRVNKSP
ECCCCCHHHHHHHHHHHCCCCCHHCCEEEEECCCCHHCCEEEEECCCEEEEEEEEECCCC
VFRLPMAQLNTEGGGKIWGTWVPIKPDLSEGVSLLAKDLQGNVLVYDTSGKLVASVREGM
EEECCHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCE
FIEVSGVTLFIDKIIGSTGLQIKADPGIPIVYLGFGLLMLSVLMSYVSHSQIWAFQESER
EEEECCCEEEEEHHHCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCE
LYIGGKTNRANVTFEREILDILDRLGSDENISLEKQKQLFSDFSEGIKTSEN
EEECCCCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure
MDVEDSDKNSLINPLRIFKREILPLLADLRLAIALLLIIAICSISGTVIEQGESIAFYQE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEECC
NYPEKPALFGFLTWKVILLLELDHVYRTWWFLSILILFGASLTACTFTRQLPALKSANRW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHCCCCCC
KFYNKKQQFKNLALSAEIETASLDSLEEILQKRGYKTSKEGDKLYGRKGIIGKVGPIIVH
CCCCHHHHHHHCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCHHHHHHH
ASMLIILAGSIIGSMTGFLGQEIVPSGETFQVKNIIDAGIFAKSQIPKNWSVRVNRFWID
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCEECCCCCCCCCEEEEEEEEE
YTPSGGIDQFYSDLSILDKSGEEVDRKTIFVNQPMRYHGVTMYQADWAIAAVKVRVNKSP
ECCCCCHHHHHHHHHHHCCCCCHHCCEEEEECCCCHHCCEEEEECCCEEEEEEEEECCCC
VFRLPMAQLNTEGGGKIWGTWVPIKPDLSEGVSLLAKDLQGNVLVYDTSGKLVASVREGM
EEECCHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCE
FIEVSGVTLFIDKIIGSTGLQIKADPGIPIVYLGFGLLMLSVLMSYVSHSQIWAFQESER
EEEECCCEEEEEHHHCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCE
LYIGGKTNRANVTFEREILDILDRLGSDENISLEKQKQLFSDFSEGIKTSEN
EEECCCCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA