| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is yfcK [C]
Identifier: 113474419
GI number: 113474419
Start: 877194
End: 878096
Strand: Direct
Name: yfcK [C]
Synonym: Tery_0559
Alternate gene names: 113474419
Gene position: 877194-878096 (Clockwise)
Preceding gene: 113474414
Following gene: 113474420
Centisome position: 11.32
GC content: 38.76
Gene sequence:
>903_bases ATGATAATTAATGTTCAGGAGGAAGAATTGAAAGATTACAGATTTATACCACAACTAACAGCAGATGGCTCATGGACCTT TTTTTCTCCCGAATTTGGTGAAACCTTTCACTCTTATTTTGGCGCTCAACAAGAAGCAGAATATAAATTTGTTGATCCAG TTCAACTATTATCTAGAGTAGATAGATCTGTAGTTTATTTACTTGACGTTTGTTATGGACTAGGATATAATACAGCTTCA GCTTTGGCAGCTATTTGGAGAATTAACCCTAGCTGCAAAATCATACAGGTAGGACTAGAGTTAGACCCAGAAGTACCAAA AGCAGCGATCGCCAAAGGTCTTTTAGATAATTGGCCTGATCCTGTGCCAGAATTATTATCTACATATGGCCAAACCCATG AATTACAAACAGAGAAAATAGAGGCCAAGCTCCTAATAGGAGATGCAAGGACAACTATTCAACAATTAAGTAATTTTAGC TTCCATACAGATGCTATATTTCTAGACCCCTTTTCACCACCCAGTTGTCCTCAACTCTGGACAGTAGAATTTTTATCTTT AGTGAGTAGTTGTCTAAAGCCTGATGGTATTCTGGCAACATATTCCTGTTCTGCAGCAGTCAGAACAGCATTACTTGAAG CTGGTTTAAAAATTGGTTCTACAATACCAGTAGGTAGGCGATCGCCAGGAACAGTGGCCAGTTTTGTGGCTCAAAATTTA CCCCCACTTTCAGACAAGGAAAAAGAACACTTACTTACTCGGGCTAGTATTCCTTACCGTGACCCACAACTATCAGACTC TAGTGAAATTATTGCGCATCGCCGTGAGTTAGAACAACAAAAATCATCCTTAGAACCGACATCTCATTGGAAAAAACGCT GGTCTAGAAAAGTTAAAAGTTAA
Upstream 100 bases:
>100_bases GGTGATAATAAAAGTCAAAAAATAAAGCATAATTAAAGCTTTTAAGCAAGAACTAGGATGACGAAAACATATTGGTAAGT AGTATTTTTTCGGTTTGTTC
Downstream 100 bases:
>100_bases AAGTAATAATGCAGCCATAAAAATTTTTGAGTTACCACAAAAAGTTTCTCATAGAAAAGAGATAATAGGATAAACCAAAG ACGACACTAGGGGAAAGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 300
Protein sequence:
>300_residues MIINVQEEELKDYRFIPQLTADGSWTFFSPEFGETFHSYFGAQQEAEYKFVDPVQLLSRVDRSVVYLLDVCYGLGYNTAS ALAAIWRINPSCKIIQVGLELDPEVPKAAIAKGLLDNWPDPVPELLSTYGQTHELQTEKIEAKLLIGDARTTIQQLSNFS FHTDAIFLDPFSPPSCPQLWTVEFLSLVSSCLKPDGILATYSCSAAVRTALLEAGLKIGSTIPVGRRSPGTVASFVAQNL PPLSDKEKEHLLTRASIPYRDPQLSDSSEIIAHRRELEQQKSSLEPTSHWKKRWSRKVKS
Sequences:
>Translated_300_residues MIINVQEEELKDYRFIPQLTADGSWTFFSPEFGETFHSYFGAQQEAEYKFVDPVQLLSRVDRSVVYLLDVCYGLGYNTAS ALAAIWRINPSCKIIQVGLELDPEVPKAAIAKGLLDNWPDPVPELLSTYGQTHELQTEKIEAKLLIGDARTTIQQLSNFS FHTDAIFLDPFSPPSCPQLWTVEFLSLVSSCLKPDGILATYSCSAAVRTALLEAGLKIGSTIPVGRRSPGTVASFVAQNL PPLSDKEKEHLLTRASIPYRDPQLSDSSEIIAHRRELEQQKSSLEPTSHWKKRWSRKVKS >Mature_300_residues MIINVQEEELKDYRFIPQLTADGSWTFFSPEFGETFHSYFGAQQEAEYKFVDPVQLLSRVDRSVVYLLDVCYGLGYNTAS ALAAIWRINPSCKIIQVGLELDPEVPKAAIAKGLLDNWPDPVPELLSTYGQTHELQTEKIEAKLLIGDARTTIQQLSNFS FHTDAIFLDPFSPPSCPQLWTVEFLSLVSSCLKPDGILATYSCSAAVRTALLEAGLKIGSTIPVGRRSPGTVASFVAQNL PPLSDKEKEHLLTRASIPYRDPQLSDSSEIIAHRRELEQQKSSLEPTSHWKKRWSRKVKS
Specific function: Unknown
COG id: COG4121
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008471 [H]
Pfam domain/function: PF05430 DUF752 [H]
EC number: NA
Molecular weight: Translated: 33571; Mature: 33571
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIINVQEEELKDYRFIPQLTADGSWTFFSPEFGETFHSYFGAQQEAEYKFVDPVQLLSRV CEECCCHHHHHHHHHCCCEECCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH DRSVVYLLDVCYGLGYNTASALAAIWRINPSCKIIQVGLELDPEVPKAAIAKGLLDNWPD HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCC PVPELLSTYGQTHELQTEKIEAKLLIGDARTTIQQLSNFSFHTDAIFLDPFSPPSCPQLW CHHHHHHHHCCCCCHHHHHHEEEEEECHHHHHHHHHHCCCEECCEEEECCCCCCCCCHHH TVEFLSLVSSCLKPDGILATYSCSAAVRTALLEAGLKIGSTIPVGRRSPGTVASFVAQNL HHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC PPLSDKEKEHLLTRASIPYRDPQLSDSSEIIAHRRELEQQKSSLEPTSHWKKRWSRKVKS CCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MIINVQEEELKDYRFIPQLTADGSWTFFSPEFGETFHSYFGAQQEAEYKFVDPVQLLSRV CEECCCHHHHHHHHHCCCEECCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH DRSVVYLLDVCYGLGYNTASALAAIWRINPSCKIIQVGLELDPEVPKAAIAKGLLDNWPD HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCC PVPELLSTYGQTHELQTEKIEAKLLIGDARTTIQQLSNFSFHTDAIFLDPFSPPSCPQLW CHHHHHHHHCCCCCHHHHHHEEEEEECHHHHHHHHHHCCCEECCEEEECCCCCCCCCHHH TVEFLSLVSSCLKPDGILATYSCSAAVRTALLEAGLKIGSTIPVGRRSPGTVASFVAQNL HHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC PPLSDKEKEHLLTRASIPYRDPQLSDSSEIIAHRRELEQQKSSLEPTSHWKKRWSRKVKS CCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]